Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0033
(671 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ509128-1|CAD48895.1| 83|Homo sapiens immunoglobulin heavy ch... 32 2.1
BC038115-1|AAH38115.1| 1712|Homo sapiens hypothetical protein FL... 31 3.8
AK001649-1|BAA91809.1| 1174|Homo sapiens protein ( Homo sapiens ... 31 3.8
AF180425-1|AAD55098.1| 1233|Homo sapiens retinoblastoma-associat... 31 3.8
BC067288-1|AAH67288.1| 547|Homo sapiens lactamase, beta protein. 30 6.6
AY358709-1|AAQ89072.1| 373|Homo sapiens MRPL56 protein. 30 6.6
AK027808-1|BAB55384.1| 373|Homo sapiens protein ( Homo sapiens ... 30 6.6
>AJ509128-1|CAD48895.1| 83|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 83
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 251 TYMKERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRHADPGK 382
T ++ N V +MNSL + ++Y +DL+D W +A G+
Sbjct: 36 TISRDNSKNTVYLQMNSLRAEDTAVYYCSKDLFDFWDGYAPSGR 79
>BC038115-1|AAH38115.1| 1712|Homo sapiens hypothetical protein
FLJ20035 protein.
Length = 1712
Score = 31.1 bits (67), Expect = 3.8
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Frame = +2
Query: 143 AHTPYAESIAPSHHST-YAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNA 319
AH AE IA + +A EE W +F E +KE LH+G+ + L +
Sbjct: 573 AHETKAEIIARENKKRLFAREEQKEEQKWNALSFSIEEQLKENLHSGIKSLEDFLKSCKS 632
Query: 320 SIYGTKEDL------YDRWKRH--ADPGKKEK 391
S + ++ WK H ++ GK K
Sbjct: 633 SCVKLQVEMVGLTACLKAWKEHCRSEEGKTTK 664
>AK001649-1|BAA91809.1| 1174|Homo sapiens protein ( Homo sapiens
cDNA FLJ10787 fis, clone NT2RP4000481, weakly similar to
ATP-DEPENDENT RNA HELICASE DOB1. ).
Length = 1174
Score = 31.1 bits (67), Expect = 3.8
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Frame = +2
Query: 143 AHTPYAESIAPSHHST-YAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNA 319
AH AE IA + +A EE W +F E +KE LH+G+ + L +
Sbjct: 573 AHETKAEIIARENKKRLFAREEQKEEQKWNALSFSIEEQLKENLHSGIKSLEDFLKSCKS 632
Query: 320 SIYGTKEDL------YDRWKRH--ADPGKKEK 391
S + ++ WK H ++ GK K
Sbjct: 633 SCVKLQVEMVGLTACLKAWKEHCRSEEGKTTK 664
>AF180425-1|AAD55098.1| 1233|Homo sapiens retinoblastoma-associated
protein RAP140 protein.
Length = 1233
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 22 YILGPACMDDLRQVNQEER--TKEDTHPSYRPKRFPSELLLRSSHTLRG 162
++LGP C D L+ N +E+ T T + +EL++ S H + G
Sbjct: 695 HLLGPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPG 743
>BC067288-1|AAH67288.1| 547|Homo sapiens lactamase, beta protein.
Length = 547
Score = 30.3 bits (65), Expect = 6.6
Identities = 26/109 (23%), Positives = 46/109 (42%)
Frame = +2
Query: 134 YYGAHTPYAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARS 313
Y G + SH S HY D + E + MKE + + S ++
Sbjct: 201 YEGEKVSVTTRLLISHLSGIRHYEKDIKKVKEEKAYKALKMMKENVAFEQEKEGKSNEKN 260
Query: 314 NASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGHRGASLENSGQSMNYF 460
+ + + T+++ + R++ PGKK+ GE + ENS +S+ F
Sbjct: 261 DFTKFKTEQENEAKC-RNSKPGKKKNDFEQGELYLREKFENSIESLRLF 308
>AY358709-1|AAQ89072.1| 373|Homo sapiens MRPL56 protein.
Length = 373
Score = 30.3 bits (65), Expect = 6.6
Identities = 26/109 (23%), Positives = 46/109 (42%)
Frame = +2
Query: 134 YYGAHTPYAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARS 313
Y G + SH S HY D + E + MKE + + S ++
Sbjct: 201 YEGEKVSVTTRLLISHLSGIRHYEKDIKKVKEEKAYKALKMMKENVAFEQEKEGKSNEKN 260
Query: 314 NASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGHRGASLENSGQSMNYF 460
+ + + T+++ + R++ PGKK+ GE + ENS +S+ F
Sbjct: 261 DFTKFKTEQENEAKC-RNSKPGKKKNDFEQGELYLREKFENSIESLRLF 308
>AK027808-1|BAB55384.1| 373|Homo sapiens protein ( Homo sapiens
cDNA FLJ14902 fis, clone PLACE1005467. ).
Length = 373
Score = 30.3 bits (65), Expect = 6.6
Identities = 26/109 (23%), Positives = 46/109 (42%)
Frame = +2
Query: 134 YYGAHTPYAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARS 313
Y G + SH S HY D + E + MKE + + S ++
Sbjct: 201 YEGEKVSVTTRLLISHLSGIRHYEKDIKKVKEEKAYKALKMMKENVAFEQEKEGKSNEKN 260
Query: 314 NASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGHRGASLENSGQSMNYF 460
+ + + T+++ + R++ PGKK+ GE + ENS +S+ F
Sbjct: 261 DFTKFKTEQENEAKC-RNSKPGKKKNDFEQGELYLREKFENSIESLRLF 308
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,749,696
Number of Sequences: 237096
Number of extensions: 2040280
Number of successful extensions: 8530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8527
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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