Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0033
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 44  WMICARSTKRKEPKKTLTPAI 106
           W IC RS  +KE  + +  A+
Sbjct: 28  WRICDRSLPQKEYNQCIAEAV 48


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 197 HYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNASIYGTKEDL 346
           H Y D +   E P  YN+    E +      K        A++YG+ E++
Sbjct: 527 HEYYDSKSSTETPPSYNQLNYNENIERFFKSK-----PPVATMYGSDEEI 571


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 68  KRKEPKKTLTPAID 109
           KRK   K LTPA++
Sbjct: 467 KRKNKNKNLTPAVN 480


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +2

Query: 146 HTPYAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERL 271
           H   A  +  S       +Y+D+ + + +P+ YN  + + R+
Sbjct: 210 HPSVAYLLVGSLKGIARQFYNDDANVYILPDPYNTKFFRYRI 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,085
Number of Sequences: 438
Number of extensions: 4543
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)