Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0030
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    27   1.6  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   6.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   6.4  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   6.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   6.4  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   8.4  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   8.4  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 232 YLGSRWQTAGYSQCKPRSCCSFYGKSSGTWWCA 330
           YL   W T G    K     + +G S+ T WC+
Sbjct: 254 YLSKEWDTEGNMDAKECLFLAAFGASACTRWCS 286


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +2

Query: 119 LSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPPWQPANILAADGRPLDTLSVNHDRAVHF 298
           L  P G+    P    A +LG H +       P Q       DG+P      N D++ +F
Sbjct: 214 LLTPTGAGFPAPSPGTANLLGFHTFDSQF---PDQ-YRFTPRDGKPPVVNGTNGDQSDYF 269

Query: 299 TGKALEHG 322
              A  HG
Sbjct: 270 GANAAVHG 277


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = -2

Query: 291 TARSWFTLRVS-SGLPSAAKILAGCHGGNERGPL*LCAPSTGAAATKGVAIWEPHGADKC 115
           TA +  TL +S +  P+   I   C+G      L +C  +       GV+    +GA   
Sbjct: 768 TATASCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVLCPIVNGVSYQNCNGACYN 827

Query: 114 PAQPARPTGAM 82
           P+Q     GA+
Sbjct: 828 PSQYGCDNGAL 838


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
 Frame = +2

Query: 176 LGAHNYRGPLSLPPWQP----ANILAADGR--PLDTLSVNHDRAVHFTGKALEHGGVHLL 337
           L  HN  G  +LPP+      AN++  D    P +T + N +R   F  K L      LL
Sbjct: 31  LPEHNSEGESTLPPYSDISKLANLVPEDSSTGPTETANPNVERRQEF--KDLHPNIYSLL 88

Query: 338 KKRSAVLA 361
           +   AVLA
Sbjct: 89  RLLIAVLA 96


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 101 AGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPPWQ 223
           A WA   S+   S+ A     AAP         P SLPPWQ
Sbjct: 424 APWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQ 464


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 368 LQEPEQQNVSSKD 330
           LQEPEQ+N+ S D
Sbjct: 159 LQEPEQENIDSDD 171


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 291 TARSWFTLRVSSGLPSAAKILAGCHGGNERGPL*LCA 181
           TAR W   R  S L     +  G H G  R P+  CA
Sbjct: 221 TARIWDVNRTKSQLEVFVHVPEGSHTGLSRIPVTSCA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,968
Number of Sequences: 5004
Number of extensions: 46278
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)