Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0030
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0161 + 21400580-21401695 32 0.23
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888... 30 0.91
02_01_0109 - 795066-796280 30 0.91
11_03_0157 + 10897769-10898066,10898308-10899461 29 2.1
12_01_0088 - 698169-698614,699514-700819,703041-703148 29 2.8
05_06_0155 - 26028923-26030263 28 3.7
12_02_0652 - 21527768-21528328,21528980-21529738,21530151-215302... 28 4.8
11_01_0087 - 654461-654912,655878-657186,659080-659187 27 6.4
10_08_1038 - 22485394-22485960,22486712-22487197 27 6.4
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 27 6.4
04_04_0490 + 25603540-25603591,25603612-25604105,25604184-25604870 27 6.4
02_05_0697 - 30999644-31000762 27 6.4
01_06_0442 + 29425199-29425274,29425389-29425429,29426097-294261... 27 8.5
>03_05_0161 + 21400580-21401695
Length = 371
Score = 32.3 bits (70), Expect = 0.23
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = -2
Query: 453 PASPSGAIGAWATKRAAGQSTRAT*D-HAAAGARTAERFFKRCTPPCSRAFPVK*TARSW 277
P S S A A G +AT HAA G A P A P +A SW
Sbjct: 253 PGSASAAAAAAQANDGGGNGAQATASGHAAGGGGGAFMHMAGSVPSMEAAMP---SATSW 309
Query: 276 FTLRVSSGLPS 244
F S GLPS
Sbjct: 310 FMDSCSYGLPS 320
>08_02_1620 -
28288152-28288353,28288469-28288557,28288634-28288828,
28289082-28289423,28290227-28291672,28292590-28292666,
28293160-28294509,28295921-28296029,28296896-28297007,
28297800-28297957
Length = 1359
Score = 30.3 bits (65), Expect = 0.91
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 479 VPNLNDQQDRPAQVEQ*VHGRPNVRQASRLGLRETTPLQEPEQQ 348
+ L QQ + Q +Q + PNV R+ + +T +Q+P+QQ
Sbjct: 447 ISTLQQQQQQNQQQQQLLGTVPNVPNIQRMHMLQTKAVQQPQQQ 490
>02_01_0109 - 795066-796280
Length = 404
Score = 30.3 bits (65), Expect = 0.91
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 453 PASPSGAIGAWATKRAAG 400
P +P+GA G+WAT RA G
Sbjct: 193 PRAPAGAAGSWATARAGG 210
>11_03_0157 + 10897769-10898066,10898308-10899461
Length = 483
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 5 KATQTTMIKLEVLCSFAAVPFA-KPSVIAPVGLAGWAGHLSAPWGSHIATPLVAAAPVLG 181
+ + I LE+ FA V + S P+ AG A HL PW AT L+ A VL
Sbjct: 161 RVVASAFIYLEIF--FALVSYTISLSDNLPLVFAGAASHLHLPWVRLTATQLLTVAAVLV 218
Query: 182 A 184
A
Sbjct: 219 A 219
>12_01_0088 - 698169-698614,699514-700819,703041-703148
Length = 619
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 7 SNTDHNDQAGGVVLLCCSTICEAQRHCSGGSSRLG 111
S +D +D + + S I Q+HCS SSRLG
Sbjct: 482 SVSDDDDSSTSSLSAAVSAISLQQQHCSASSSRLG 516
>05_06_0155 - 26028923-26030263
Length = 446
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -2
Query: 279 WFTLRVSSGLPSAAKILAGCHGGNERGPL*LCAPSTGAAATKGVAIWEPHGADKCPAQPA 100
W R +G S + +LAGCHG + + P TKG + A +
Sbjct: 271 WVVRRPHAGEASLSGLLAGCHGTHGELDIDELMPEGFLERTKGRGLAAGSWAPQADVLRH 330
Query: 99 RPTGA 85
R TGA
Sbjct: 331 RATGA 335
>12_02_0652 -
21527768-21528328,21528980-21529738,21530151-21530216,
21530550-21530598,21530717-21530817,21531469-21531540,
21531630-21531746,21531870-21531959,21532224-21532319,
21532429-21532482,21533210-21533290,21533382-21533581,
21533677-21533804,21533943-21533995,21534312-21534374
Length = 829
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 422 GRPNVRQASRLGLRETTPLQEPEQQNVSSKDAHHHVPELF 303
G+ N +Q SR + QE E++ ++ D H + E+F
Sbjct: 540 GQQNRKQLSRSSANSMSDFQEIEEEEINKGDQHPVLSEIF 579
>11_01_0087 - 654461-654912,655878-657186,659080-659187
Length = 622
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 7 SNTDHNDQAGGVVLLCCSTICEAQRHCSGGSSRLG 111
S+ D + + + S++ + Q+HCS SSRLG
Sbjct: 485 SDDDDSSTSSLSAAVSASSLHQQQQHCSASSSRLG 519
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +2
Query: 44 CSFAAVPFAKPSVI---APVGLAGWAGHLSAPWGSHIATP-LVAAAP 172
C+ AA P P+++ AP+GLA HL AP ++ TP L AAAP
Sbjct: 100 CAAAAPP--SPNILRIHAPIGLARSPAHLLAPTPAN--TPHLTAAAP 142
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 486 AACPKPQ*PTGPASPSGAIGAWATKRAAGQSTRAT*DHAAAGARTAERFFKRCTPPCS 313
A P P P P+S S GA A+ R G+ + +A+ AR C+P C+
Sbjct: 16 ARAPPPPPPRAPSSASPVSGAPASLRFRGRRAASA---SASAARRRRGASLPCSPRCA 70
>04_04_0490 + 25603540-25603591,25603612-25604105,25604184-25604870
Length = 410
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 285 RSWFTLRVSSGLPSAAKILAGCHGGNERGPL 193
R+ TLR S +A +++ H G +RGP+
Sbjct: 42 RAQKTLRASGSASTARRLVLSSHDGEDRGPV 72
>02_05_0697 - 30999644-31000762
Length = 372
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 8 ATQTTMIKLEVLCSFAAVPFAKPSVIAPVGLAGWAGHLSAPWGS 139
A+ + + L V+ + AA F P++ P+GL A PW +
Sbjct: 3 ASTSPRLALLVVVAAAAFVFVSPAMAFPMGLPATANPFPNPWSA 46
>01_06_0442 +
29425199-29425274,29425389-29425429,29426097-29426166,
29426251-29426399,29426654-29426749,29426850-29426920,
29427247-29427308,29427490-29427553,29427630-29427714,
29427793-29427919,29428092-29428174,29428271-29428331,
29428534-29428670,29428984-29429280
Length = 472
Score = 27.1 bits (57), Expect = 8.5
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 89 PVGLAGWAGHLSAPWGSHIATPLVAAAPVLGAHNYRGPLSLPPWQPANILAADGRPLDTL 268
P+ G AP G+ + + PV+ A N+ G S +PA + D P+DT
Sbjct: 349 PIASVGTLAKQKAPVGNDAS---FSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTS 405
Query: 269 SVNHDRA 289
+ RA
Sbjct: 406 EPSRTRA 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,627
Number of Sequences: 37544
Number of extensions: 411839
Number of successful extensions: 1353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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