Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0030
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 496 SQMCSVSQTSMTNRTGQPKWSNRCMGDQTCGR 401
           S  CS SQ+  ++ +   + SNR      CGR
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGR 49


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 496 SQMCSVSQTSMTNRTGQPKWSNRCMGDQTCGR 401
           S  CS SQ+  ++ +   + SNR      CGR
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSESSGYCGR 49


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 416 PNVRQASRLGLRETTPLQEPEQQNVSSKDAH 324
           P+VR  + L L   TPLQ       SS D H
Sbjct: 878 PSVRPFAPLLLLHLTPLQPRFYSISSSPDVH 908


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 101 AGWAGHLSAPWGSHIATPLVAAAPVLG--AHNYRGP 202
           A W G   A  G +I   + AAAP  G    +YR P
Sbjct: 750 AEWPGLEHANIGPYIQKMIAAAAPFKGMETQDYRIP 785


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 64  WYCSKGAQHLQLDHCGLCCF 5
           +YC  GA   + DH  LC +
Sbjct: 324 YYCISGAPIERPDHAVLCVY 343


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 50  FAAVPFAKPSVIAPVGLAGWAGHLSA 127
           +A  P  K    AP  +  W G LSA
Sbjct: 53  YALPPVGKFRFKAPQKIPAWIGELSA 78


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 313 QSFSRKMNSTIVVYTESIQRSAIGC 239
           QS ++ M+   V++   +  SAIGC
Sbjct: 306 QSSAKVMSKNGVLFFGLVNNSAIGC 330


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 50  FAAVPFAKPSVIAPVGLAGWAGHLSA 127
           +A  P  K    AP  +  W G LSA
Sbjct: 53  YALPPVGKFRFKAPQKIPAWIGELSA 78


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 493 QMCSVSQTSMTNRTGQPK 440
           Q CS+   +  N T  PK
Sbjct: 401 QKCSIESITSVNSTSSPK 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,164
Number of Sequences: 438
Number of extensions: 3506
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)