Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0027
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   1.9  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   4.3  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   9.9  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.9  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   9.9  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   9.9  

>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 243 SKSIIVLLNTEK-YILSTDNTN*DIVTLKYL*MIFLVVLADFCNFKILQFYSFLRAKYFL 67
           SK  +  LNT+K Y+L    TN   V   +  M F  +L+ F     LQFY   +  + L
Sbjct: 122 SKITVWSLNTQKGYLLPHVKTNVSKVYALHPSMQFCTILSRFNGSDCLQFYQISKKAWIL 181


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 315 IYLEPVCTRPRLPEKSLLN*IYTTLHFEEHPTHTQYYMV*K 437
           +++   C  P  PE+ L+N IY +L +   P    +Y V K
Sbjct: 385 VHVHCFCRFPD-PEEDLINRIYASLGYRFSPEEVDFYYVRK 424


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 200 KMYFSVFKSTIIDFDAGNY 256
           K  F+  K+TI DF++GNY
Sbjct: 294 KATFNRLKNTIDDFESGNY 312


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 385 RCILKNILLILSTTWSEN 438
           RC LK ++  LST WS N
Sbjct: 606 RCDLKGLIRRLSTEWSSN 623


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -2

Query: 315 YPQSPSSNFFLFS------RWQLQMP*FPASKSIIVLLNTEKYILS 196
           +P +P  +F  FS      R    MP FP  K    + NTE+ ILS
Sbjct: 350 FPSTPVPDFLNFSHKSVMGRSTFNMPNFPEPKFFEDIPNTERCILS 395


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +2

Query: 11  PNIYNLQKVLIPHQI*LWSKKYFALKNE*NCKILKLQKSASTTKNIIHK 157
           PN  +L+K+L+  Q   + K Y + ++E N  +L+L ++A+  +N+ H+
Sbjct: 5   PNEDDLEKLLVAEQNVPYGKNYESFEDEEN-YLLEL-RNANALENLEHR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,072
Number of Sequences: 5004
Number of extensions: 51948
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)