Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0024
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    31   0.10 
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   2.9  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 194 QVIHSVICLHYNHPRTVHNLK-DLLTSVLIHQHNQ 93
           Q+I   IC  +NH R +HN+K  LL + + H + Q
Sbjct: 285 QIIDFTICYTHNHHRRIHNIKARLLETHIFHPNTQ 319


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 149 FLDDYSANILLNELLVKKNYTQAADIAALIMLQEEYNNDILCSLCQYSSYM 301
           FL+D + N+++N       Y + A  + L  + E+Y+  + C+  QY+ Y+
Sbjct: 105 FLEDLNPNVIIN------TYLEFASASNLFSIIEQYDVVLDCTDNQYTRYL 149


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 206 YTQAADIAALIMLQEEYNNDILCSLCQYSSYMF-IKNYVEPEPAV 337
           Y QA DIA ++ L  EY++     +  +S+Y+   ++ ++PE  V
Sbjct: 79  YAQAFDIAEIVNLIREYSHKYHKHIPAFSAYIVAFRSVLQPEVQV 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,615
Number of Sequences: 5004
Number of extensions: 39681
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)