Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0023
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 0.78
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 1.0
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 2.4
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 3.1
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 24 4.2
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 24 4.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 24 5.5
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 23 7.3
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 23 7.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 23 9.6
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.6
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 0.78
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 216 EVCVQRSSANIRRKVFQLNSIPVAY*KRLLQPIRCQ 109
E C+ RS+ +R+V Q+N + V + + Q RCQ
Sbjct: 1009 ENCLNRSAELYQRQVAQVNDLEVRFARLWTQCQRCQ 1044
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 26.2 bits (55), Expect = 1.0
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = -3
Query: 295 DASRLEFFKENTSSVNLSHEFY*RTRGSMCATFFCKYSKKGFSVELDTCSLLKA 134
D ++L F E +L EF + C FC G++ + C L +A
Sbjct: 242 DKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRA 295
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.0 bits (52), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 188 FAEERCTHTSSRALIEFMAEVDGRCIFFEK 277
F E+ T++ +E VD RC+FFEK
Sbjct: 525 FFEKLSLVTNALDNVEARMYVDRRCVFFEK 554
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.6 bits (51), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 199 FFCKYSKKGFSVELDTCSLLKATAATYPLST 107
FFC Y F+V+ SL+ A +Y LST
Sbjct: 23 FFCFYHAAPFNVKTLVHSLIPPGALSYLLST 53
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 179 LRIFAEERCTHTSSRALIEFMAEVDGRCIFFEKFQA 286
++ FA + TSS EF+AEV +C F+K A
Sbjct: 20 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGA 55
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 160 VQLKNLSSNICRRTLHTYFLSCANRI 237
V L+N +N+C+ +L+ + L C N +
Sbjct: 139 VSLEN--TNVCKASLYRFMLMCKNEL 162
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 23.8 bits (49), Expect = 5.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 207 VQRSSANIRRKVFQLNSIPVAY*KRLLQPIRCQQQRLL 94
++RS+ NI +QLN I + +LLQ + + Q L
Sbjct: 745 LKRSAKNIFDLAYQLNGILPVFHPQLLQQLLLRNQPFL 782
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 156 SSSTEKPFFEYLQKNV 203
+SS EKP F+YL N+
Sbjct: 275 TSSLEKPKFDYLPPNI 290
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 276 FSKKIHRPSTSAMNSISAREEVCVQRSSANI 184
+ K+ + S+S NSIS R+E + AN+
Sbjct: 479 YEPKLEQHSSSKRNSISTRKEEDAASALANL 509
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 157 DTCSLLKATAATYPLSTAT 101
DT SL KAT + PLS T
Sbjct: 265 DTASLSKATISQQPLSPMT 283
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 144 KLQVSSSTEKPFFEYLQKNVAHI 212
KLQ + +KPFF+ +K H+
Sbjct: 1338 KLQKKTDNKKPFFKKKKKKRKHL 1360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,090,616
Number of Sequences: 5004
Number of extensions: 17112
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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