Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0023
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 28   1.6  
SB_42491| Best HMM Match : Atrophin-1 (HMM E-Value=6.5)                27   2.1  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  

>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 128 CNLSAVNSNGY*RCSIYSSISAQLQQFLCCQWILVYLCA 12
           CN   +    Y R + Y+ +S+     LC  +IL+  CA
Sbjct: 291 CNTDHIIHENYSRFTCYNVLSSYFSVTLCIYYILLVFCA 329


>SB_42491| Best HMM Match : Atrophin-1 (HMM E-Value=6.5)
          Length = 1066

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 128  CNLSAVNSNGY*RCSIYSSISA--QLQQFLCCQWIL 27
            CN S ++       + Y S S   QL Q LCC W+L
Sbjct: 899  CNKSGMHLRESISLASYQSASKLRQLAQLLCCDWLL 934


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 211  MCATFFCKYSKKGFSVELDTCSLLKATAATYPL 113
            +CA FF KY  +  S+ +D CS +++ +A   L
Sbjct: 2118 LCAGFFRKYETR--SIAVDQCSNVRSQSAAITL 2148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,193,653
Number of Sequences: 59808
Number of extensions: 133386
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)