Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0023
(300 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 31 0.19
At5g13110.1 68418.m01502 glucose-6-phosphate 1-dehydrogenase, pu... 27 3.1
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 26 4.1
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 26 5.4
At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to ... 26 5.4
At5g26940.4 68418.m03215 exonuclease family protein contains exo... 25 9.4
At5g26940.3 68418.m03214 exonuclease family protein contains exo... 25 9.4
At5g26940.2 68418.m03213 exonuclease family protein contains exo... 25 9.4
At5g26940.1 68418.m03212 exonuclease family protein contains exo... 25 9.4
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -1
Query: 297 KMQAAWNFSKKIHRPSTSAMNSISAREEVCVQRSSANIRRKVFQLNSIPVAY*KRLLQPI 118
K Q N + I PS+S S S+ V V+R+ A+ R+K+ + + Y ++++
Sbjct: 55 KQQKRDNLNSVISSPSSSTSASSSSSSSVIVRRTEASRRKKMARSQDSVLKYMMKIMEVC 114
Query: 117 RCQ 109
+ Q
Sbjct: 115 KAQ 117
>At5g13110.1 68418.m01502 glucose-6-phosphate 1-dehydrogenase,
putative / G6PD, putative similar to SP|Q43839
Glucose-6-phosphate 1-dehydrogenase, chloroplast
precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
contains Pfam profiles PF02781: Glucose-6-phosphate
dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
dehydrogenase NAD binding domain
Length = 596
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 175 LSSNICRRTLHTYFLSCANRIHG*G*RTMYFL*KIPSGLH 294
LSS++ R+ H+ +L+ + ++G R++ FL P GL+
Sbjct: 4 LSSSVTTRSYHSGYLASFSPVNGDRHRSLSFLSASPQGLN 43
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -1
Query: 300 SKMQAAWNFSKKIHRPST-----SAMNSISAREEVCVQRSSANIRRKVFQLNSIPVAY 142
S++Q A+N +K + P+ SAM + E C + +S I R+ F N++ Y
Sbjct: 816 SQLQTAYNEAKPLATPAITATLFSAMGLYAYALESCQELTSGEIPREHFAYNAVIYTY 873
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 169 KNLSSNICRRTLHTYFLSCAN 231
K L N C++T+ Y L CA+
Sbjct: 498 KELPCNACQKTIRDYMLCCAD 518
>At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to
regulatory protein NPR1 (nonexpresser of PR genes 1,
NPR1; noninducible immunity 1, Nim1; salicylic acid
insensitive 1, Sai1) [Arabidopsis thaliana]
SWISS-PROT:P93002
Length = 593
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 191 AEERCTHTSSRALIEFMAEV 250
A+E C H + R ++FM EV
Sbjct: 151 ADENCCHVACRPAVDFMLEV 170
>At5g26940.4 68418.m03215 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 181 SNICRRTLHTYFLSCANRIHG 243
S + R +H++ SC R+HG
Sbjct: 6 SQVSRLRIHSFGSSCCERVHG 26
>At5g26940.3 68418.m03214 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 181 SNICRRTLHTYFLSCANRIHG 243
S + R +H++ SC R+HG
Sbjct: 6 SQVSRLRIHSFGSSCCERVHG 26
>At5g26940.2 68418.m03213 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 181 SNICRRTLHTYFLSCANRIHG 243
S + R +H++ SC R+HG
Sbjct: 6 SQVSRLRIHSFGSSCCERVHG 26
>At5g26940.1 68418.m03212 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 181 SNICRRTLHTYFLSCANRIHG 243
S + R +H++ SC R+HG
Sbjct: 6 SQVSRLRIHSFGSSCCERVHG 26
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,581,717
Number of Sequences: 28952
Number of extensions: 85498
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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