Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0022
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_33082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_4162| Best HMM Match : GMAP (HMM E-Value=3)                         27   5.3  
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)                    27   9.3  
SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)                  27   9.3  

>SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 353 PHRGFPGYYFPYTNQEGYLSPLVAVHLQRP 264
           PH G PGYY P+  +  Y+ P +  +L+ P
Sbjct: 220 PHIGAPGYYSPHLLRH-YIHPAMVPYLKGP 248


>SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 354 TSPRLPGILLPLHQPRRIPEPSCSCALAET*DW 256
           +SP +P  LLP ++   +P  +  CAL +  DW
Sbjct: 38  SSPEMPAKLLPQYRALHVPRNAKICALKDA-DW 69


>SB_33082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 392 PADRENIGPIQYLPHRGFPGYYFPYTNQEGYLSP 291
           PAD +N     +LPH GF GY+     + GY  P
Sbjct: 44  PADADNQ---IFLPHHGFHGYHTGLHFRHGYYVP 74


>SB_4162| Best HMM Match : GMAP (HMM E-Value=3)
          Length = 219

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 368 DQCSRDQLGSRLGRKPKPCLGSSYDT 445
           D  + D+ GS++G  PKP  GSS D+
Sbjct: 191 DNDAGDKKGSKVGSSPKPDRGSSADS 216


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 269  SASAQLQEGSGILL-GWCRGSSI--PGSLGEVGTVWDQCSRDQLGSRLGRKPKPC 424
            +A A+     GI++ GW    S+  P  +   GTV  QC+RD L  +L R P  C
Sbjct: 1088 AAYAKACADKGIVIDGWRDTISVCKPKFVCPAGTVLKQCNRDPLTRKL-RCPSTC 1141


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 416 WVSCQGENPADRENIGPIQYLPHRGFPGYYFPY 318
           WVSC G   AD ++     Y     FP YYFP+
Sbjct: 15  WVSC-GIKMADDKDTRSA-YKQSNEFPSYYFPF 45


>SB_55731| Best HMM Match : DUF988 (HMM E-Value=7.2)
          Length = 140

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 97  LFIYTSIYFFIFCVSAVCTLYSINISMCTEPMASSLSYLML 219
           L +Y  +   +  +SAV   + I + M +E + SS SYL++
Sbjct: 16  LAVYFGVNVLLGAMSAVLNAFIIFVIMSSERLRSSPSYLLI 56


>SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)
          Length = 802

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +2

Query: 104 YIRLYTSLSSACLLFVLST--RSTSRCVQSPW-LQVSHT*CCSPRHDIQC 244
           YI+++TSL  A   +VL +   STSR   SP+  ++  T  C  + D +C
Sbjct: 523 YIKVFTSLVPALFAYVLRSGKTSTSRPPYSPYDFRLYITLSCIRKKDRRC 572


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,939
Number of Sequences: 59808
Number of extensions: 272375
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)