Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0021
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6VS45 Cluster: MB2; n=2; Plasmodium yoelii|Rep: MB2 - ...    35   1.9  
UniRef50_A0D6J6 Cluster: Chromosome undetermined scaffold_4, who...    34   3.3  
UniRef50_Q5UPH4 Cluster: Putative ankyrin repeat protein R96; n=...    34   4.3  
UniRef50_A6LQE1 Cluster: Spore coat protein CotS; n=4; Clostridi...    33   9.9  

>UniRef50_Q6VS45 Cluster: MB2; n=2; Plasmodium yoelii|Rep: MB2 -
           Plasmodium yoelii
          Length = 272

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 578 NFDCSATNSHNKFLNYFKKITIASNTQIVYLNVTMWQLSERN 453
           N+D +     N FLN+F K+ I +N +++  N T++  +  N
Sbjct: 3   NYDSNRNIIQNSFLNFFNKLNIFNNKKVILNNFTLYHFNPSN 44


>UniRef50_A0D6J6 Cluster: Chromosome undetermined scaffold_4, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_4,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 196

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -2

Query: 175 NYYVNIINKSFFLLLFKKNRTTRIIDASIVNLKCTNLSVH 56
           NY ++I     FLL+F KN+  R +   I NLKC  LSV+
Sbjct: 76  NYVISIEYFIIFLLIFTKNKDVRYLKCIISNLKC-ELSVY 114


>UniRef50_Q5UPH4 Cluster: Putative ankyrin repeat protein R96; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: Putative ankyrin
           repeat protein R96 - Mimivirus
          Length = 1015

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 408 NYTVIVCSCRYPSKLISFR*LPHCYVEIYYLRIRSDRDFLKIIQ 539
           N  ++   CRY + L+ +  +P CYV     RI+SD+D +++++
Sbjct: 398 NPKIVSTKCRYNNNLLHYTLMP-CYVYSNVPRIKSDKDIIELVK 440


>UniRef50_A6LQE1 Cluster: Spore coat protein CotS; n=4;
           Clostridium|Rep: Spore coat protein CotS - Clostridium
           beijerinckii NCIMB 8052
          Length = 338

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 444 LDIGSYIR*RYNLIIHVVTKIKLNSMLTLRRNKIVCSKIYLY-FKIKYLVVKALK 283
           L I  YI   YNL +  + K+K NS   + R++  C K+  Y F   Y ++ A+K
Sbjct: 8   LKIKGYIEENYNLNVEDIEKVK-NSYKVITRDERYCLKVVKYEFSHFYFILSAMK 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,106,616
Number of Sequences: 1657284
Number of extensions: 10782165
Number of successful extensions: 19302
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19298
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)