Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0021
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.6  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   6.6  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   8.7  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 516 DRF*YANSISQRNNVAIIGTKLIYLDIGSYI 424
           DR  YA  +S+  ++A +G+K I +DI  +I
Sbjct: 15  DRMLYAMLLSKDTSLAFLGSKKIMIDILQHI 45


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/42 (16%), Positives = 25/42 (59%)
 Frame = -2

Query: 208 MSKYTFPTNNFNYYVNIINKSFFLLLFKKNRTTRIIDASIVN 83
           M+K+ +    +++ +N+++ + + L   KNR  + +++  ++
Sbjct: 338 MNKFHWKRKGYSFVINVLSIALYKLFTPKNRYMKALESGCID 379


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 184 NNFNYYVNIINKSFFLLLFKKNRTTRIIDASIVNLKCTNLSVHFPTPL 41
           N+F  Y  ++ + FFL++F     T I+   ++N       +H P P+
Sbjct: 8   NHFINYFPLVLRLFFLVVFGLYSFTLILHLLVINRVDVFSLLHTPLPV 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,057
Number of Sequences: 5004
Number of extensions: 51270
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)