Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0021
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317...    29   5.2  
03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092     28   6.9  

>02_03_0065 -
           14629676-14629804,14631119-14631247,14631383-14631736,
           14631817-14632063,14632155-14632231,14632574-14632648,
           14632721-14632822,14632966-14633084,14633538-14633627,
           14634866-14635022,14635085-14635098,14635425-14635548,
           14635628-14635678,14635793-14635891,14636962-14637072
          Length = 625

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -1

Query: 350 IKLFVRKFICILKLST*LSKR*NADFSVQFISFKLIAFYFAFIFLTMNVKVHISN 186
           +K  V  F C  K+   L ++ + DF ++ +   L+A    ++F+   +K  ++N
Sbjct: 269 LKPLVPSFPCFAKIVVSLMEKPHVDFGLKLLGADLMAIPGLYVFVQEIIKTQVAN 323


>03_04_0057 - 16910083-16910223,16911408-16911496,16912029-16912092
          Length = 97

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 84  FTIDASIILVVRFFLXXXXXXDLFMIFT**LKLFVGNVYFDIHC*KYKCKVKSN 245
           + I+A+ +LVV FFL      ++    +    L VG  + +    +YKC  KS+
Sbjct: 43  YVIEAACLLVVEFFLAKIHMGEIHKFLS--FGLLVGQRHVNRKAQRYKCNGKSS 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,706
Number of Sequences: 37544
Number of extensions: 234001
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)