Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0021
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   1.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 522 NHDRF*YANSISQRNNVAIIGTKLIYL 442
           NH  F Y   I+ RNN ++ GT  I++
Sbjct: 479 NHADFSYTIVINNRNNTSMKGTVRIFI 505


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 NNSRTYYGYWSPSSRNLTIIINLNYKFEHFM 622
           NN  TY    + SS+N+    +  YK ++FM
Sbjct: 195 NNIETYIVNTNYSSKNMREYNDPEYKLDYFM 225


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 205 SKYTFPTNNFNYYVNIINKSFFLLLFKKNRTTRIIDASIVNLKCTN 68
           + Y    NN+N Y N  N ++  L +  N   +I     V + C N
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYCGN 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,063
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)