Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0020
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    28   0.91 
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   1.6  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   2.8  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   4.9  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    25   6.4  
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.5  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 338  CELIICTDFHEIATHDLNHNSVPNNAFLSIQELGVA 445
            CE ++CT  H +  HD     +  NAFL+I  L V+
Sbjct: 1047 CEPLLCTLCHLLVIHDSRTVGLVVNAFLAITPLLVS 1082


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 374 ATHDLNHNSVPNNAFLSIQELGVA*FITAGAVAVTHTLEHFSFGARSQTVRIS--EVINQ 547
           A  +L H S+PN+ F S Q +G     T     +  TL+ +S    +    IS  E INQ
Sbjct: 44  ALENLEHRSIPNDLFHSSQPVGSP---TRNGDDIPSTLDLYSSDNAAIDTDISEDETINQ 100

Query: 548 R 550
           R
Sbjct: 101 R 101


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 529 DADSLTSSTETEVFKSVGDSDSACSDESGYSE 434
           D+DS +SS+++E   S   SDS+ S  S  SE
Sbjct: 143 DSDSSSSSSDSESESSSEGSDSSSSSSSSESE 174



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 529 DADSLTSSTETEVFKSVGDSDSACSDESGYSE 434
           D+DS +SS+++E   S   SDS+ S  S  SE
Sbjct: 197 DSDSSSSSSDSESESSSEGSDSSSSSSSSESE 228


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 65  YTNKHLNIVIRQLAKVHMYPVIYKSKINISTYGTMSSTNCF 187
           + N HLN  I   +K     V+  +  N+S Y T+ +   F
Sbjct: 425 FENSHLNFQITPKSKTRDQVVLLATYTNLSPYDTVENLQSF 465


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 504 PKLKCSRVWVTATAPAVMNQATPSSWMERKALLGTLL 394
           P L+    WV  T   + N+ +PSSW   K +L   L
Sbjct: 232 PNLQNVYDWVWCTYDELKNKLSPSSWDSVKNILSDRL 268


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   FFFFYMTIISIFINIFNLHYIQT 74
           F +F++T+I + ++    HY+ +
Sbjct: 62  FVYFFLTLIILLVSFMGFHYLNS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,032
Number of Sequences: 5004
Number of extensions: 44542
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)