Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0020
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549...    33   0.17 
01_03_0003 + 11509530-11512772                                         31   0.70 
10_08_1016 - 22262760-22264331                                         29   2.1  
11_06_0511 - 24434007-24436814                                         28   5.0  

>01_06_0876 -
           32654209-32654238,32654357-32654672,32654833-32654901,
           32655238-32655275,32655418-32655478,32655550-32655617,
           32655729-32655889,32656687-32656751,32656883-32656956,
           32658158-32658245,32658800-32658879,32659168-32659224,
           32659332-32659404,32659524-32659762,32659846-32660025,
           32660150-32660440
          Length = 629

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 532 TDADSLTSSTETEVFKSVGDSDSAC-SDESGYSEFLDGKESIIGNTIMV 389
           TD D L+ +   EV + + D  S+C S +SG    LD  ESI G +++V
Sbjct: 530 TDLDVLSKTKPLEVNELLSDGISSCTSHDSGLEASLDASESINGASLVV 578


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 496  EVFKSVGDSDSACSDESGYSEFLDGKESIIGNTIM 392
            E + S+  S   C+D SGYSE +DG  S   N+ +
Sbjct: 963  ECWVSINHSQINCTDTSGYSEIVDGNGSECPNSTL 997


>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 183 VLRTVNLPNKTSYRIHYL*-LKHRIYNAKVVLVCKLQVAQIKFNID*RNEHVTVN 344
           V   + L +  + R+H+L   K+R+YN K  L  K  V  I  +I+  +  +T++
Sbjct: 289 VTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITID 343


>11_06_0511 - 24434007-24436814
          Length = 935

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 461 GAVAVTHTLEHFSFGARSQTVRISEVINQRFKVLFKGAQDTSAERRV 601
           G  A+ H LE  SF  RS T  ISE+IN    ++ + A+     RR+
Sbjct: 32  GRSALEHGLEGGSFLIRSLTRVISEIINSNDILVLRQAELQGRLRRI 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,503,721
Number of Sequences: 37544
Number of extensions: 247873
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)