Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0020
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.43 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 362 FHEIATHDLNHNS 400
           FH +++H LNHNS
Sbjct: 221 FHRLSSHTLNHNS 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 15  FYMTIISIFINIFNL 59
           +++ + S+F+ IFNL
Sbjct: 236 YFLNMASVFMRIFNL 250


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 550 SLIDNLTDADSLTSSTETEVFKSVG 476
           S I+N ++ +S  SST+T++ +  G
Sbjct: 221 STIENESETESNASSTKTKMRRKSG 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,844
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)