Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0020
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ...    30   1.4  
At1g45170.1 68414.m05179 expressed protein contains similarity t...    29   3.1  
At1g02550.1 68414.m00206 invertase/pectin methylesterase inhibit...    28   4.1  
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016...    28   5.5  
At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    27   7.2  
At2g22140.1 68415.m02630 expressed protein ; expression supporte...    27   7.2  
At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside h...    27   9.6  

>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
          (S1) identical to S-locus related protein SLR1 homolog
          (AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
          profiles PF01453: Lectin (probable mannose binding),
          PF00954: S-locus glycoprotein family
          Length = 439

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 7/24 (29%), Positives = 21/24 (87%)
 Frame = +3

Query: 3  FFFFFYMTIISIFINIFNLHYIQT 74
          FFFFF++ ++++F+++F+++ + +
Sbjct: 14 FFFFFFVVLLALFLHVFSINTLSS 37


>At1g45170.1 68414.m05179 expressed protein contains similarity to
           vacuolating cytotoxin (vacA) GI:6634155 from
           [Helicobacter pylori]
          Length = 180

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 82  KYSNTSTG*STYVPCYIQIKNKHLNLWDH-VQHKLF*GQLIYQT 210
           KY+    G +T+ PCY   K    N+WD  + HKL+ G  +  T
Sbjct: 92  KYTYVHGGIATFEPCYDVAK----NMWDFAISHKLYGGDNLKAT 131


>At1g02550.1 68414.m00206 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
           SP|Q43867; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 242

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -2

Query: 586 ASILSTFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSA----CSDESGYSEFLD 425
           A +L    +N+ESL+D+L DA       + E  +SV  +  A    CSD    S  L+
Sbjct: 159 ADVLDLCVDNYESLLDDLKDASVAVDDGDFERLESVVSAAIADVVTCSDAFAESSELE 216


>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; similar to  Myosin heavy
            chain, non-muscle (Zipper protein) (Myosin II)
            (SP:Q99323) {Drosophila melanogaster} similar to EST
            gb|T76116
          Length = 1730

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 577  LSTFEENFESLIDNLTDADSLTSSTETEVFKSVGDSDSACSD 452
            LST E+N   L +   +  +   + E E+ K+V D+ S  S+
Sbjct: 887  LSTAEDNISRLTEENRNVQAAKENAELELQKAVADASSVASE 928


>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -2

Query: 448 SGYSEFLDGKESIIGNTIMV*IMCRDFMKIGADYKFTVTCSFLQSILNFICATWSLHTRT 269
           S Y       + I GN++M+  +CRD + I     F V       +LN+    +   T +
Sbjct: 396 SHYPRLRGENDRIFGNSMMITDVCRDMILIENQLPFFVVKEIFLLLLNY----YQQGTPS 451

Query: 268 TLAL*IRCFSY 236
            + L  R FSY
Sbjct: 452 IIQLAQRHFSY 462


>At2g22140.1 68415.m02630 expressed protein ; expression supported
           by MPSS
          Length = 506

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 417 SFPSKNSE*PDSSLQALSLSPTLLNTSVSVLEVRLSASVRLSIRDSKFSSK 569
           S P+   + P+SS   + +  T L+   SV++    +    S R+ KFS K
Sbjct: 37  SDPTPQKQPPESSFTPIFVPETPLSDDFSVVKCSFGSRALASNREDKFSGK 87


>At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside
           hydrolase family protein similar to Chain A, Crystal
           Structure Of Nucleoside Hydrolase From Leishmania
           MajorGI:8569431; contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 336

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 498 VSVLEVRLSASVRLSI-RDSKFSSKVLKILALRGGY 602
           V++L +    ++ L+I RDS F+SKV KI+ L G +
Sbjct: 139 VTILALGPLTNLALAIKRDSSFASKVKKIVILGGAF 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,390,626
Number of Sequences: 28952
Number of extensions: 217882
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)