Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0018
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   2.0  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   4.6  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    24   6.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    24   6.1  

>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 179 TVSAKYSRWITSRRSYTKMKSNFKRSRSNNDHRNLCILRRI 57
           T S+ YS   +  RSY++   ++ +SRS +  R++  +  I
Sbjct: 629 TYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPINNI 669


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 97  ERDRLKLLFIFVYDLRLVIHLEYFAE 174
           E + +K  F F +DL+ ++ L+ +AE
Sbjct: 325 ELEAIKFTFAFWWDLKQMVELDVYAE 350


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 211 LHAPPPGHVREQSQQSTRDGLQAAGRTRK 125
           +++ PPGH +  S +  +D     GR+ K
Sbjct: 11  MYSAPPGHSKAVSTELNKDLSSVGGRSAK 39


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 244 PEQTDQRHTLLLHAPPPGHVREQSQQSTRDG 152
           P  +D++   L   PPPG   E  + S+++G
Sbjct: 549 PTNSDEKSHALGFPPPPGQKIEFQRSSSKNG 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,660
Number of Sequences: 5004
Number of extensions: 23753
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)