Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0018
(358 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-... 56 5e-09
At4g25160.1 68417.m03622 protein kinase family protein contains ... 27 4.9
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 26 6.4
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ... 26 6.4
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ... 26 6.4
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ... 26 6.4
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 26 8.5
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near... 26 8.5
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near... 26 8.5
>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
beta-alanine synthase, putative similar to beta-alanine
synthase [Dictyostelium discoideum] GI:14334061;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 408
Score = 56.4 bits (130), Expect = 5e-09
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = -2
Query: 315 PDGVRCPGLSRTRDGLLIASVALTLNRQIKDTRCYYMPHRLDMYVNSLSKVLEMDYKPQV 136
PD P LSR +DGLLI+ + L L RQ KD + M R ++Y + L+K ++ D+KPQV
Sbjct: 338 PDASCTPSLSRYKDGLLISDMDLNLCRQYKDKWGFRMTARYEVYADLLAKYIKPDFKPQV 397
Query: 135 VHE 127
V +
Sbjct: 398 VSD 400
>At4g25160.1 68417.m03622 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 835
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 161 SRWITSRRSYTKMKSNFKRSRSNNDHRN 78
SRW RR Y + K S SN ++ N
Sbjct: 280 SRWTPRRRDYEERKEAMSSSSSNREYGN 307
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 118 LFIFVYDLRLVIHLEYFAETVHVHVQAVGHVITACVF 228
L FV++ RL I L+ +T + + GHVI VF
Sbjct: 227 LISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVF 263
>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 453
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 242 RVKATDAINKPSLVRDRPGHLTPSGPN 322
R KA +A+N P R R + P PN
Sbjct: 417 RFKAREALNHPFFTRSREQSIPPFNPN 443
>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 242 RVKATDAINKPSLVRDRPGHLTPSGPN 322
R KA +A+N P R R + P PN
Sbjct: 431 RFKAREALNHPFFTRSREQSIPPFNPN 457
>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 467
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 242 RVKATDAINKPSLVRDRPGHLTPSGPN 322
R KA +A+N P R R + P PN
Sbjct: 431 RFKAREALNHPFFTRSREQSIPPFNPN 457
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 176 VSAKYSRWITSRRSYTKMKSNFKRSRSNNDHRN 78
V KY++W S++ Y + +S ++R+ D+RN
Sbjct: 94 VWVKYAQWEESQKDYARARSVWERA-IEGDYRN 125
>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 496
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 249 LTLNRQIKDTRCYYMPH 199
L + R++ D CYY PH
Sbjct: 308 LIVRRELSDNFCYYQPH 324
>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
identical to type II CPD photolyase PHR1 [Arabidopsis
thaliana] GI:2984707; similar to class II DNA photolyase
(GI:5081541) [Chlamydomonas reinhardtii]; supporting
cDNA gi|2984706|gb|AF053365.1|AF053365
Length = 490
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 249 LTLNRQIKDTRCYYMPH 199
L + R++ D CYY PH
Sbjct: 308 LIVRRELSDNFCYYQPH 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,024,106
Number of Sequences: 28952
Number of extensions: 132939
Number of successful extensions: 428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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