Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0017
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   6.9  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    25   6.9  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   9.1  
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo...    25   9.1  

>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -1

Query: 385 ERLLKSY---TKCLLNQGPCTAELKKIKDKIPEAL--ETHCAKCTDKQKQMAKQLAQGIK 221
           ERL+KS     KC LN       + ++  K P     ++      + +K++   L + ++
Sbjct: 433 ERLVKSQGDLVKCFLN---IQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDL-ENVE 488

Query: 220 KTHPELWDEFITFYDPQGKYQ 158
           +T  EL D  I FYD  G YQ
Sbjct: 489 ET--ELTDSPIYFYDTLGNYQ 507


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 309 IKFQKLWRPIVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFTTLKE 166
           I FQ L R +VR  + +++      RK++ +     GTS  LF ++ E
Sbjct: 88  INFQLLVRNVVRYAICSQTSHNTITRKDIVQKAFPEGTSRNLFQSVFE 135


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query: 310 DKIPEALETHCAKCTDKQKQMAKQL-AQGIKKTHPELWDEF 191
           DKI +++E H +K    Q++  +QL  +  +K +P++  +F
Sbjct: 90  DKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQF 130


>SPBC8D2.12c |||mitochondrial DNA binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 282 IVRNVLINRSRWRNNLRKELRRHTRSYGTSSLLFT 178
           IV  V  NR+R  ++++  LR H  S  T   LF+
Sbjct: 128 IVEAVTDNRARAASSIKHILRNHGASLSTVKFLFS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,125
Number of Sequences: 5004
Number of extensions: 48543
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)