Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0017
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 32 0.40
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 28 4.9
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 28 6.4
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 28 6.4
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 28 6.4
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 385 ERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKK 218
E + K KC N C ++K+ K + ++ C KC K+ AK + + KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKCAKNVQKMCKK 1320
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 346 QGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 194
+ P T +++ KD + E HC +C Q + + I+K + +LW E
Sbjct: 679 ENPKTDDIQS-KDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCE 728
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 346 QGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 194
+ P T +++ KD + E HC +C Q + + I+K + +LW E
Sbjct: 676 ENPKTDDIQS-KDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCE 725
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 28.7 bits (61), Expect = 3.7
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Frame = +3
Query: 210 GCVFLIPCASCFAICFCLSVHFAQW--VSKASGILSLIFFNSAVQGP*FSKHLVYDLRSL 383
GC+ +P F I C+SV F+ + ++ SG ++++ + + + L +
Sbjct: 394 GCITDLPGIQFFCIYACVSVAFSYFYQLTFFSGAMAIMGEVEREKRHCLFFYRTFQLVDI 453
Query: 384 SLLKTSEASKLSSIGSYLS*ASTAKNRPRKTNSSFILKFSTRSLKETLP 530
S + SKL I S S + N +NSSF + S K+T+P
Sbjct: 454 SKMNEEADSKLQQIKS-RSASPAPFNYLSSSNSSFSSDSDSFSSKKTIP 501
>U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical
protein F46C8.7 protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 221 EDTPGVMGRVHYFLRPSRKISNFFQRFS*VL 129
E+ P V+GR H L+P N++++F V+
Sbjct: 155 ENDPRVIGRAHSILKPYGLAGNYWEKFGEVM 185
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 388 NERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQL 236
NE+L + + L + +LKKI+DK+ K DK K + ++L
Sbjct: 20 NEKLTRDVSDAKLLKEDAEIKLKKIRDKLNGEHSEKLGKLNDKYKAVQEEL 70
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
defective protein 19,isoform a protein.
Length = 1783
Score = 27.9 bits (59), Expect = 6.4
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +2
Query: 107 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 259
L++ +Y L K S++ S LR+ K + LR LLNSLR + LLL
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609
Query: 260 FISTFRTMGLQSF-WNFIFN 316
FI F +G+Q F F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
defective protein 19,isoform b protein.
Length = 1877
Score = 27.9 bits (59), Expect = 6.4
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +2
Query: 107 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 259
L++ +Y L K S++ S LR+ K + LR LLNSLR + LLL
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609
Query: 260 FISTFRTMGLQSF-WNFIFN 316
FI F +G+Q F F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 27.9 bits (59), Expect = 6.4
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +2
Query: 107 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 259
L++ +Y L K S++ S LR+ K + LR LLNSLR + LLL
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609
Query: 260 FISTFRTMGLQSF-WNFIFN 316
FI F +G+Q F F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,848
Number of Sequences: 27780
Number of extensions: 267839
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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