Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0013
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    28   1.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   4.9  
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    26   6.5  

>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 463 VWIACNFYWSLFYLYQRFVFNTGLFATQ-ITYL*TSKKLQ 347
           +W++C+FY+S+ YL     +    ++ + IT L   + LQ
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTLQ 304


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 413 VCVQHWIICDSDYLPIDL*--KITTCDCGTFKWH-IPYFIRCSL 291
           VC    I C +D+  +DL   +   CDCGT + H IP  +R S+
Sbjct: 62  VCYSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSIPCNLRKSV 105


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 511 IWETALKLFY*RRTWSVWIACNFYWSLFYLY 419
           IW+  L  F+   TW  W    F++ +FY +
Sbjct: 136 IWQITL-FFFLEDTWHYWAHRLFHYGIFYRF 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,218
Number of Sequences: 5004
Number of extensions: 59268
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)