Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0013
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41871| Best HMM Match : YabP (HMM E-Value=0.95)                     33   0.24 
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   7.0  
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)               28   9.2  

>SB_41871| Best HMM Match : YabP (HMM E-Value=0.95)
          Length = 183

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 173 VFLICYAKDANIFRKKFLKIVCLKIIVVSRPQKKHKIYVRRKNKMLFFRS 24
           V+++C  K  N  ++    I C+KI    +P KK +  +R KN  LFF S
Sbjct: 98  VYILCRRKARNNLKRL---IFCVKISTSHQPIKKAESLIRSKNSALFFYS 144


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 466 SVWIACNFYWSLFYLYQR--FVFNTGLFATQI-TYL*TSKKLQHVIVALLNGTFLILLGA 296
           S+WI C FY  +F + Q   F F+ G     I  +    K   ++I  LL    L+ +  
Sbjct: 75  SIWIICIFYVCIFAVLQGPVFYFHAGKLICHIRLHDMAYKNTWNIITGLLFA--LLPMAT 132

Query: 295 VFMWYLDIFR 266
           +F+ Y  +FR
Sbjct: 133 LFLCYFKLFR 142


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 252 SYVLFLNISKYHIKTAPNKIRNVPFKSATITCCN 353
           S V  L +S   + T+P  +  VP + A IT CN
Sbjct: 664 SEVSVLKVSPNEVATSPKPLMTVPVERAIITHCN 697


>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
          Length = 358

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 156 CKGCKYF*EKVP*NRLLKNYSCIET 82
           C+GCK F ++     L+K YSC+ +
Sbjct: 24  CEGCKSFFKRTVQRGLVKKYSCVRS 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,888
Number of Sequences: 59808
Number of extensions: 387106
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)