Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0013
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15520.1 68414.m01867 ABC transporter family protein similar ...    29   4.3  
At3g61750.1 68416.m06925 auxin-responsive protein -related simil...    28   7.5  
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    27   9.9  

>At1g15520.1 68414.m01867 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1423

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 460  WIACNFYWSLFYLYQRFVFNT--GLFATQIT 374
            W A  F+W LF++Y  F+  T  G+ A  +T
Sbjct: 1279 WTAVKFFWYLFFMYGSFLTFTFYGMMAVAMT 1309


>At3g61750.1 68416.m06925 auxin-responsive protein -related similar
           to auxin-induced protein AIR12  GI:11357190 [Arabidopsis
           thaliana];
          Length = 398

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 406 FNTGLFATQITYL*TSKKLQHVIVALLNGTFLILLGAVFMWYL 278
           F+    AT I    +++K +H ++A+L   FL+ +GA+   YL
Sbjct: 200 FSKASGATSIKTTTSTEKTKHGVMAILGWGFLLPVGAILARYL 242


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1420

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 460  WIACNFYWSLFYLYQRFVFNT--GLFATQIT 374
            W A  F W LF++Y   ++ T  G+  T IT
Sbjct: 1272 WSAVKFLWYLFFMYFSIMYFTFYGMMTTAIT 1302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,198,338
Number of Sequences: 28952
Number of extensions: 275004
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)