Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0012
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +2

Query: 266 PSNHVSHFNYIDFIFFESD*----ASVTSKSIL*SFSRDTDHENDIKSIVMKRPCSLGL- 430
           P N      Y D +   +D     AS   K IL   S   D  N+I ++ MKR   LG  
Sbjct: 211 PENSPEKARYTDALSLRNDWRTAKASGDYKGILAFLSATFDSVNEINAVFMKREDCLGPE 270

Query: 431 -GDGSALQSDIRKV 469
             DGS L  D  ++
Sbjct: 271 DEDGSGLDYDFIRI 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,606
Number of Sequences: 59808
Number of extensions: 263512
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)