Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0012
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    30   1.5  
L26290-1|AAA27981.1|  441|Caenorhabditis elegans clathrin-associ...    27   8.1  
AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : short...    27   8.1  
AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : short...    27   8.1  

>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 448  SIRYS*GFSFEFFIMSFLVFFNINTYLNVTTFINPCKEPVQEND 579
            S +Y   F F +F +SFL + +   Y    TFI+ C+E   ++D
Sbjct: 1349 SQQYPTAFEFSYFYISFLAYHSTAGYFR--TFIDDCEEKRLQSD 1390


>L26290-1|AAA27981.1|  441|Caenorhabditis elegans
           clathrin-associated protein homologueprotein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 506 KTKKDIIKNSNEKPYEYLIEAPIRLPSPANT-GVSLQC 396
           K +  ++  SN KP     +  +R+P+P NT GV L C
Sbjct: 304 KMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLIC 341


>AF099001-8|AAP13778.1|  435|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform b protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 506 KTKKDIIKNSNEKPYEYLIEAPIRLPSPANT-GVSLQC 396
           K +  ++  SN KP     +  +R+P+P NT GV L C
Sbjct: 298 KMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLIC 335


>AF099001-7|AAP13777.1|  441|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 23, isoform a protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 506 KTKKDIIKNSNEKPYEYLIEAPIRLPSPANT-GVSLQC 396
           K +  ++  SN KP     +  +R+P+P NT GV L C
Sbjct: 304 KMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLIC 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,132
Number of Sequences: 27780
Number of extensions: 218408
Number of successful extensions: 591
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)