Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0012
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +1

Query: 10  KFFDGFFNICAVLILLVFIQY 72
           K  D F ++C V + +  ++Y
Sbjct: 305 KAVDAFMSVCTVFVFMALMEY 325


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 263 LPSNHVSHFNYIDFI 307
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 263 LPSNHVSHFNYIDFI 307
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 278 VSHFNYIDFIFFESD*ASVTSKSIL*SFSRDTDH-ENDIK 394
           + HFNY+  IF  S  +    +++L  F   + + E+D++
Sbjct: 162 LKHFNYMKVIFIHS--SDTDGRALLGRFQTTSQNLEDDVE 199


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 263 LPSNHVSHFNYIDFI 307
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,400
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)