Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0012
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51230.1 68416.m05608 hypothetical protein                          27   9.9  
At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    27   9.9  

>At3g51230.1 68416.m05608 hypothetical protein 
          Length = 230

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 494 DIIKNSNEKPYEYLIEAPIRL--PSPANT 414
           ++I +   +P+ +L+ +P+RL  P+PANT
Sbjct: 109 ELIHSIKTRPFIHLVTSPMRLLAPTPANT 137


>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -3

Query: 515 ILKKTKKDIIKNSNEKPYEYLIEAP 441
           ++ + +   IKN+ E PY++LI++P
Sbjct: 262 VIARNEISSIKNNKETPYKFLIKSP 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,676
Number of Sequences: 28952
Number of extensions: 179542
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)