Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0011
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 28 1.4
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 28 1.4
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 4.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.2
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 5.5
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 26 5.5
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 25 7.3
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 7.3
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 7.3
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 494 VSELNAAWNDNIGNSNSKQAIITLISLPVK 583
V + N W+D G N+K+A+ + LP+K
Sbjct: 121 VEKPNVRWDDIAGLENAKEALKETVLLPIK 150
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 400 RKSLIELAELEIKHARSQQELFR 468
R+SLI L E ++KH SQ EL R
Sbjct: 280 RESLIMLLEKQLKHEESQVELLR 302
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 267 LLQVPVGCFVGS*TPESPHEHRFRCVSVSHVVPES 163
LL V CF S + HE R + V+V+H + S
Sbjct: 279 LLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKNS 313
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Frame = +1
Query: 67 MERFLTKASETFDKCRKIEGRMASDQDLKLADTLRYYMRDAHAAKAVLVRRLRCLAAYEA 246
+E +L ++ K +++ R+ + D + + + H L++R A +
Sbjct: 1290 LENYLDAFNQVNFKKMELDNRLTTT-DAEFTKVVADLEKLQHEHDDWLIQRGDLEKALKD 1348
Query: 247 ANRN-LEKARAKNKDVHAAEQGQAEACAKFEQLSARARE 360
+ +N L K +++H+ E+G+ E + +LS+R +
Sbjct: 1349 SEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRLED 1387
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/84 (23%), Positives = 33/84 (39%)
Frame = +1
Query: 241 EAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLIEL 420
E ++ LEK K + + E A+ EQ+ EEL + K
Sbjct: 487 EYTDQKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRSLEEESI----KESSAT 542
Query: 421 AELEIKHARSQQELFRKSLQVLXE 492
+ E +H RS ++L + Q + E
Sbjct: 543 QQNENQHKRSSRKLLYEDKQAIQE 566
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 569 SLPVKFMFQIVCLGCDKVILF 631
SLP +F VC+GC V LF
Sbjct: 345 SLPYLAIFVGVCIGCSSVALF 365
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 307 GQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLIELAELEI 435
G A + A + L +ARE ++F + F+K ++ +E +I
Sbjct: 152 GYANSAASLKLLELKARELGVEFVFGKAGKFKKFVVNHSETDI 194
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 229 LAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKF 333
+ AYE +LE+A NK+V+ Q ACAK+
Sbjct: 126 IEAYEGGPIDLERANVTNKEVYDFLQ---TACAKY 157
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 7.3
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 235 AYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLI 414
AY A ++ R + + EQ AEA + E+ +ARA EE + +K I
Sbjct: 762 AYAKAKNVIDAERERQRK-EIFEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAI 820
Query: 415 ELAELEIKHA--RSQQELFRK 471
E + A R Q+E+ K
Sbjct: 821 EERTRAAREAKEREQREMAEK 841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,548
Number of Sequences: 5004
Number of extensions: 45686
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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