Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0011
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)             114   5e-26
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               34   0.089
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)                31   1.1  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    29   2.5  
SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_34346| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)       28   7.7  
SB_30841| Best HMM Match : HLH (HMM E-Value=1.5)                       28   7.7  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
          Length = 427

 Score =  114 bits (275), Expect = 5e-26
 Identities = 52/98 (53%), Positives = 72/98 (73%)
 Frame = +1

Query: 4   ADAHIKLSSCITQLATREQPPMERFLTKASETFDKCRKIEGRMASDQDLKLADTLRYYMR 183
           AD +IK+S+ I  + T E   +++FL K  + F++ RK+EGR+ASD+DLK+ D LRYYMR
Sbjct: 136 ADVYIKISTGIASMGTSEYTGLDKFLNKTGDYFERARKLEGRVASDEDLKMVDLLRYYMR 195

Query: 184 DAHAAKAVLVRRLRCLAAYEAANRNLEKARAKNKDVHA 297
           D  AAK +L RR +CLA YE AN+ L+KAR KNK++ A
Sbjct: 196 DTEAAKNLLHRRAKCLAEYENANKALDKARMKNKEITA 233


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
 Frame = +1

Query: 94  ETFDKCRKIEGRMASDQDL--------KLADTLRYYMRDAHAAKAVLVRRLRCLAAYEAA 249
           E FD+  K+E R+   +DL        K  D+L+       A     V ++      EA 
Sbjct: 225 EIFDELNKLEERLQDLEDLQAQRFELQKKYDSLKEKYETLRAENDDFVGQINAYVDLEAK 284

Query: 250 NR-NLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRV--AAFRKSLIEL 420
            R    + +AK  ++ A     AE C   E+  AR ++E+ D R +        K+L ++
Sbjct: 285 GREQFARLQAKYDELVAENAELAENCDLLEKNEARLKKEIDDLRAQLADNDDLEKNLDDM 344

Query: 421 AELEIKH--ARSQQELFRKSLQVLXECQ 498
            +LE K+     ++E   + + VL E +
Sbjct: 345 RKLESKYELVIIEKEKLEREIIVLREVE 372


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 33/150 (22%), Positives = 61/150 (40%)
 Frame = +1

Query: 49  TREQPPMERFLTKASETFDKCRKIEGRMASDQDLKLADTLRYYMRDAHAAKAVLVRRLRC 228
           + E P +E    K     D+CR++E ++   ++    D +     DA   +   V R   
Sbjct: 216 SEESPSVETLCRKLQSQRDQCRRLEAKITEMEETH-QDVILKLREDAKREEDRQVSR--- 271

Query: 229 LAAYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKS 408
            A  EA +   EK R   +++   EQ +     + E+    ++   +    + ++   K 
Sbjct: 272 -AVAEARSEQEEKFREVVEEMRVKEQDRIRQAVETERRIMESQHGSVTQLQQTLSEKNKE 330

Query: 409 LIELAELEIKHARSQQELFRKSLQVLXECQ 498
           L E     +  A+SQ E  R  LQ + E +
Sbjct: 331 L-EQYRSALSSAKSQYEQARDELQRVKESE 359


>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 303 FGSVNIFILRSRLLQVPVGCFVGS*TPESPHEHRFRCVSVS 181
           + S ++F+  S L QVP G   G  T +     R+ CVS+S
Sbjct: 32  YQSCHVFVCGSNLFQVPAGSHYGCCTGQIVDRRRYVCVSIS 72


>SB_18589| Best HMM Match : Filament (HMM E-Value=0.024)
          Length = 324

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
 Frame = +1

Query: 241 EAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLIEL 420
           + A   +E+   KN  + ++ + +++A    E   +     L +  T    + +  L+EL
Sbjct: 94  QEAKGQIEEMTQKNARIKSSLKEKSDALVALEAAKSAENNVLSEQVTSLQDSLQHRLVEL 153

Query: 421 AELEIKHARSQQELFR-KSLQVLXECQ*TECGLE 519
           + L+ +HAR++++L   + LQ   E +     LE
Sbjct: 154 SALQQQHARAKEDLSAIRDLQAQTETKVQSATLE 187


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
 Frame = +1

Query: 175  YMRDAHAAKAVLVRRLRCLAAYEAANRNLEKARAKNKDVHAAEQGQ---AEACAKFEQLS 345
            + R+  AAKA    R +     +A    L   + +      A+ G     E   +  +L 
Sbjct: 1028 FAREVKAAKAEA--RAQAAEGRQAEREELTAEQEQEFMELVAKSGSFSTGEMAQRKAELK 1085

Query: 346  ARAREELIDFRTRRVAAFRKSLIE-LAELEIKHARSQQELFRKSLQVL 486
             + +++L +F +     F  + ++ +  LE+KHA ++ EL  K LQ L
Sbjct: 1086 LKHKKQLAEFDSETEKKFALAEMDAMPSLEVKHAHARLELREKQLQEL 1133


>SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 262 EKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLIELAELEIKH 441
           E  ++  KD+ A ++  +   A  E+L      EL+D ++  +    KSL E  E +   
Sbjct: 163 ESRKSLEKDISALQEKLS--LADQERLRMSKEIELLDNKSSALEEESKSLQEQLEFQEMK 220

Query: 442 ARSQQELFRKS-LQVLXECQ 498
               QEL R++ LQ   ECQ
Sbjct: 221 YSQMQELSRQAVLQQQKECQ 240


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = +1

Query: 34  ITQLATREQPPMERFLTKASETFDKCRKIEGRMASDQDLKLADTLRYYMRDAHAAKAVLV 213
           IT  A       ERF    S TF K   +EG+M S Q    A +L+  + +    K + +
Sbjct: 450 ITTKAKSYASYQERFCNSMSATFQKKALVEGKMVSSQGSAQAVSLQTEVTEVD--KDLAL 507

Query: 214 RRLRCLAAYE 243
           RRL   A  E
Sbjct: 508 RRLLWEATQE 517


>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 205 PLSLRERLSCSTGECPP-ASGPGRTPCDPR 119
           PL L    SC++G+CP     PG  P  PR
Sbjct: 334 PLELHTATSCASGKCPGCVYYPGMVPRSPR 363


>SB_34346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 137 DAMRPSIFRHLSNVSEAFVRNLSMGGCSL 51
           D M P ++    NV    +RN S  GC++
Sbjct: 123 DVMTPGVYGQCVNVESVIIRNQSCSGCTV 151


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 241 EAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRR----VAAFRKS 408
           E  N+  E  +  +K+V + +Q   +   + EQ+ +R + E+ + RTR        F++ 
Sbjct: 110 EFDNQMWELKQGHSKEVASLKQNFEQQKTELEQMLSREKSEMREARTREQNEMQQKFKRE 169

Query: 409 LIELAE-LEIKHARS 450
           L EL E LE  H  +
Sbjct: 170 LSELRETLEKDHVHN 184


>SB_59184| Best HMM Match : Glyco_transf_17 (HMM E-Value=1.6e-11)
          Length = 268

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 330 FSARLRLTLFGSVNIFILRSRLLQVPVGCFVG 235
           F  RLR + FG    F   SR  Q+P GC +G
Sbjct: 221 FGFRLRWSAFG---FFWKNSRFTQIPAGCTIG 249


>SB_30841| Best HMM Match : HLH (HMM E-Value=1.5)
          Length = 189

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +1

Query: 250 NRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLIELAEL 429
           N   E+      +  AA++   +A A+F    ARA+ EL+  +    AA R  LI+  +L
Sbjct: 75  NTMQEELDDAENEAKAADERSKKAAAEF----ARAQAELVSAQDHATAADRIKLIDTVDL 130

Query: 430 E 432
           E
Sbjct: 131 E 131


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 38/146 (26%), Positives = 64/146 (43%)
 Frame = +1

Query: 55   EQPPMERFLTKASETFDKCRKIEGRMASDQDLKLADTLRYYMRDAHAAKAVLVRRLRCLA 234
            EQPPM++ L     TFD    + G   +D  +K    L   MR     ++V V+ L+   
Sbjct: 640  EQPPMKKILPSRRNTFD----LTGDEHTDARIK---ELEAGMR----LRSVQVQELQ-QK 687

Query: 235  AYEAANRNLEKARAKNKDVHAAEQGQAEACAKFEQLSARAREELIDFRTRRVAAFRKSLI 414
              +A N +  K R  N  +H   + +A  C    Q++  A+ E I F   ++    ++L 
Sbjct: 688  LLDAENGDRSKHRWNN--IHTMAEAKA-CCQVLLQMTIDAKLEEIKFE-EQIKENEENLK 743

Query: 415  ELAELEIKHARSQQELFRKSLQVLXE 492
            E   L  K    + E+ R+  + L +
Sbjct: 744  EFRLLSEKKELERLEVLRQENESLKQ 769


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,297
Number of Sequences: 59808
Number of extensions: 389258
Number of successful extensions: 1624
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1623
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)