Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0010
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0543 + 10427321-10428315,10428440-10429154 33 0.22
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746... 33 0.22
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 32 0.50
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 30 1.5
01_06_1285 - 35995943-35996087,35996909-35997697,35997802-359978... 30 1.5
02_02_0238 + 8163922-8164362,8165008-8165118,8165205-8165249,816... 30 2.0
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 3.5
06_03_0721 - 23861426-23861929,23862013-23862219,23862598-238628... 28 8.2
01_01_0030 + 226182-226634,226742-226864,227557-227785,228653-22... 28 8.2
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 272 DLQSTPDPAPA*QSSQHDTLPVVGPLVSPHGQVPPP 379
D+ P P PA S H P P V+P +PPP
Sbjct: 63 DMTPPPGPGPAAAPSPHSPSPSNAPWVAPAADIPPP 98
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 272 DLQSTPDPAPA*QSSQHDTLPVVGPLVSPHGQVPPP 379
D + P P PA Q++ +P GP P +PPP
Sbjct: 11 DSPAPPRPTPAPQATPPPAIPESGPPPPPAPDMPPP 46
>03_02_0804 +
11374219-11374221,11374326-11374473,11374556-11374629,
11374736-11375233,11375749-11376093,11376178-11376390,
11376669-11377457,11377686-11377769
Length = 717
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 34 AQASGTAPTGSSVQKRPRSA--NSFKKKRRHPPRLNNVDRSSAQTREVTV 177
A AS TAP+GS RP+ A N K +PP N R + T VTV
Sbjct: 183 APASQTAPSGSPAVGRPQQAYENESTNKPSNPPDANMSRRDKSSTSLVTV 232
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 251 LQTTRDLDLQSTPDPAPA*QSSQHDTLPVVGPLVSPHGQVPPP 379
L TT L TP P P S+ +LP PL+ H Q PPP
Sbjct: 72 LLTTAAPALAPTPTPPPP-SSTASSSLPPPTPLLPKHQQAPPP 113
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 51 GAHGQLGPEAASFGELVQEETTPPAETQQRGPQLGPNQRGNSEWR 185
G G AA+ GE+ +EET T+ RG Q P ++ W+
Sbjct: 75 GETGTAIKNAAAAGEMGEEETAAMGITRTRGDQETPRKKKGRSWK 119
>01_06_1285 -
35995943-35996087,35996909-35997697,35997802-35997871,
35997989-35998220
Length = 411
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 6 ASAQPRSGGRASVRHGAHGQLGPEAASFGELVQEETTPP 122
A+ Q G R+S G H Q AA+ EL +EET+PP
Sbjct: 203 AATQTEDGYRSS--RGRHAQRAAAAAAQEELSREETSPP 239
>02_02_0238 +
8163922-8164362,8165008-8165118,8165205-8165249,
8166066-8166138,8166215-8166327,8166430-8166489,
8167287-8167334,8167422-8167490,8167618-8167679,
8167771-8167828
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 34 AQASGTAPTGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQTREVTVSGVTVVITEYK 210
+ + G++ G Q R R + + +RR R DR + R V VS + +TE K
Sbjct: 131 SSSDGSSNGGGQPQNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQK 189
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 188 PLS*PNTNRRNRFPAARVTLNLQTTRDLDLQSTPDPAPA*Q----SSQHDTLPV-VGPLV 352
P S P ++R + P + + R S P PAP+ Q +S T+PV P
Sbjct: 30 PASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSPAPSPQQQRVASPPPTIPVKFSPPA 89
Query: 353 SPHGQVPPPRLFLP 394
+P PPP + +P
Sbjct: 90 APVKVPPPPPVQVP 103
>06_03_0721 -
23861426-23861929,23862013-23862219,23862598-23862852,
23862858-23863212,23863533-23863834,23864006-23864281,
23864854-23865167,23865411-23865683,23865831-23866415,
23866806-23867132,23867270-23867337,23868670-23868746
Length = 1180
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 37 QASGTAPTGSSVQKRPRSANSFKKKRRHPPRLN 135
+ G A G S+Q RP +++KK+ + P +N
Sbjct: 273 RVEGMAEEGGSIQ-RPNKTSTYKKRSKESPNIN 304
>01_01_0030 +
226182-226634,226742-226864,227557-227785,228653-228696
Length = 282
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 266 DLDLQSTPDPAPA*QSSQHDTLPVVGPLVSPHGQVPPP 379
D D + P PAPA HD+ P GP +GQ PPP
Sbjct: 18 DDDRRRHPAPAPA---YGHDSAPPPGP----YGQAPPP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,512,451
Number of Sequences: 37544
Number of extensions: 415373
Number of successful extensions: 1315
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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