Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0010
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47584| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_10366| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               28   6.3  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_47584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/29 (72%), Positives = 23/29 (79%)
 Frame = +1

Query: 124 PRLNNVDRSSAQTREVTVSGVTVVITEYK 210
           PRL NVDRSSAQ   VTV  VTV+IT+YK
Sbjct: 24  PRLQNVDRSSAQHMAVTVGNVTVIITDYK 52


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 7   PRLNPALVAAQASGTAPTGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQTREVTVSG 183
           PR +       A  T  +GSS Q+ PRS +S ++  R         +S +  +    SG
Sbjct: 447 PRSSSQRTPRSAQRTPRSGSSAQRTPRSGSSVQRTPRSGSLAQGTPKSGSSAQRTPSSG 505


>SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 286 TRSRSSITKLSTRYLTGGRTSCESARAGTTTPPIS 390
           TRSRSS+ +  T+ L+ GR   ++ RA     P++
Sbjct: 275 TRSRSSVDEAQTKSLSDGRRLTQNKRAKKILTPVA 309


>SB_10366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 75  EAASFGELVQEETTPPAETQQRGPQLGPNQRGNSEWRYRCHNRIQTE 215
           E AS   ++++E + P+ET    P      RGN E  + C      E
Sbjct: 6   ENASLEHMLEDEASGPSETHTASPMQTEPHRGNGE-SHECDQHFSAE 51


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 275 LQSTPDPAPA*QSSQHDTLPVVGPLVSPHGQVPPPRLFLP 394
           LQ+TP    +    +  T+P + P   P    PPP L +P
Sbjct: 615 LQATPPHLQSTAQPRPTTVPPLPPTPPPRQSTPPPLLLIP 654


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 4    KPRLNPALVAAQASGTAPTGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQ 159
            +P L+  L   Q + +APT  S++  P + N+       PP  N  D+S +Q
Sbjct: 6381 EPSLDELLGRVQPAISAPTKPSLELSPITYNNPSINPPTPPTSNQTDQSCSQ 6432


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 7    PRLNPALVAAQASGTAPTGSSVQKRPRSANSFKKKRRHPP 126
            P ++   + AQ+   AP+  + Q  PR A    + R HPP
Sbjct: 1850 PPMHAGSIPAQSIPVAPSRGTRQYPPRGAPMMHRGRGHPP 1889


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494,329
Number of Sequences: 59808
Number of extensions: 434180
Number of successful extensions: 1254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)