Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0010
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    30   0.018
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 4   KPRLNPALVAAQASGTAPTGSSVQKRPRSANSFKKKRRHPPRLNNVDRSSAQTREV 171
           +P  NPA+   Q S  A +    Q  P    S +++RR  PR N+V +    +R V
Sbjct: 375 EPSKNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRIV 430


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 637 PKVREAVMTLSALIPY*SYRRFFYCLDGWTSSQPTW 530
           P +    +TLS   PY SY  +   L    +S PT+
Sbjct: 622 PSLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTY 657


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 43  SGTAPTGSSVQKRPRSANSFKKKRR 117
           S +APTGSS      +A +   KRR
Sbjct: 147 SSSAPTGSSCGPGAAAAAALLSKRR 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,583
Number of Sequences: 438
Number of extensions: 4089
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)