Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0007
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    34   0.016
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   1.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   4.2  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    25   7.4  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 437 KAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLL 586
           K    +AV+R++F   +F L +A I+    +       IQNG W  K +L
Sbjct: 87  KCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQNGLWPFKIVL 136


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 262 ELVQDGHAEQHSE---QAVLPQQHASCAAEQRPNTAPISSF 149
           +L+ D  A QH     Q  +P   AS +    P  AP+SSF
Sbjct: 174 KLLPDQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSSF 214


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 74  ILILLNAHKNIQLQIF*ICH 15
           +L +LN H   QL++F +CH
Sbjct: 711 LLTILNLHDRSQLKLFEVCH 730


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 20  KSKKSATEYFYVRLIISKYRYLLLGM*IVVHKTDNTINTK*ELKTRNGCS 169
           K  K+ TE  Y+R +IS+   + L M +++HK    I+   E   RN  S
Sbjct: 404 KLYKTTTE-MYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLS 452


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 616 HPRKSICFTWMVFGM 660
           HP K +C +W + GM
Sbjct: 135 HPAKRLCLSWAIVGM 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,533
Number of Sequences: 5004
Number of extensions: 59310
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)