Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0006
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   3.3  
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    26   5.8  

>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 154 KKKYNNFRCSIVAHSISRLLVLLKSSVMCCPSYKRERLRLP 32
           K+  ++FR S  AH++ R L +   S    PSY    +RLP
Sbjct: 476 KEFTSSFRHSKAAHNLHRDLYVNVLSQAYWPSYPESHIRLP 516


>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 476 LFQNVTSTHELISNVIFSNKIYFYEFIEIGTVPALRVMKKYIY 604
           +++NV++   +   +I  N IY Y F++  T+    + KK +Y
Sbjct: 15  VYENVSNCAAIHEQLISQNPIYDYAFLDAATI----LYKKQVY 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,973
Number of Sequences: 5004
Number of extensions: 53336
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)