Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0006
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_43977| Best HMM Match : VWA (HMM E-Value=4.9e-13)                   29   2.6  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   6.1  
SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    28   8.0  

>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 169  FILKCKKKYNNFRCSIVAHSISRLLVLLKSSVMCCPSYKRERLRLPATIFGRVQI 5
            ++ KC K++N  RC I  +++     LL  S     +   + L+   ++FG   I
Sbjct: 5022 YVCKCTKQFNGSRCEIACNNLIDFGFLLDGSRFLTSTSFEKSLKFLQSLFGLFSI 5076


>SB_43977| Best HMM Match : VWA (HMM E-Value=4.9e-13)
          Length = 227

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 169 FILKCKKKYNNFRCSIVAHSISRLLVLLKSSVMCCPSYKRERLRLPATIFGRVQI 5
           ++ KC K++N  RC I  +++     LL  S     +   + L+   ++FG   I
Sbjct: 23  YVCKCTKQFNGSRCEIACNNLIDFGFLLDGSRFLTSTSFEKSLKFLQSLFGLFSI 77


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 274 EIVHFNSCVSYFLKDLVLSYSCNLCISRPPNER 372
           E ++   C  YF+    LS  C L   +PP +R
Sbjct: 175 EAIYHRKCFQYFIAGRSLSMLCGLTKGQPPKKR 207


>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 309 KIRYTAVEMYDFEIPTIKSDLPFA 238
           + +YT VE YD  +P  KSDL F+
Sbjct: 240 RYKYTYVEKYDQCVPQCKSDLMFS 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,740,106
Number of Sequences: 59808
Number of extensions: 360331
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)