Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0006
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   9.4  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   9.4  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   9.4  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   9.4  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   9.4  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   9.4  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 IISIA*IICNVLSKLQKGASSPSCHHFRSSP 9
           I +IA I C     LQ   S P+ HHFR+ P
Sbjct: 528 IFTIAFICCYSAISLQLFYSVPNLHHFRTFP 558


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 IISIA*IICNVLSKLQKGASSPSCHHFRSSP 9
           I +IA I C     LQ   S P+ HHFR+ P
Sbjct: 528 IFTIAFICCYSAISLQLFYSVPNLHHFRTFP 558


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 IISIA*IICNVLSKLQKGASSPSCHHFRSSP 9
           I +IA I C     LQ   S P+ HHFR+ P
Sbjct: 586 IFTIAFICCYSAISLQLFYSVPNLHHFRTFP 616


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 IISIA*IICNVLSKLQKGASSPSCHHFRSSP 9
           I +IA I C     LQ   S P+ HHFR+ P
Sbjct: 586 IFTIAFICCYSAISLQLFYSVPNLHHFRTFP 616


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 IISIA*IICNVLSKLQKGASSPSCHHFRSSP 9
           I +IA I C     LQ   S P+ HHFR+ P
Sbjct: 632 IFTIAFICCYSAISLQLFYSVPNLHHFRTFP 662


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 IISIA*IICNVLSKLQKGASSPSCHHFRSSP 9
           I +IA I C     LQ   S P+ HHFR+ P
Sbjct: 558 IFTIAFICCYSAISLQLFYSVPNLHHFRTFP 588


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,175
Number of Sequences: 27780
Number of extensions: 299526
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)