Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0004
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 372 YFNQASNPSKQSNV-MHRHIINFIKFIWWY 286
           +++   N   +SN+ M++      KF+WWY
Sbjct: 56  WYDVGRNYDMESNMDMYKDKNVVQKFLWWY 85



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 517 FAGQHNTGMHFLH 555
           +AG+H   M FLH
Sbjct: 22  YAGRHTADMDFLH 34


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 372 YFNQASNPSKQSNV-MHRHIINFIKFIWWY 286
           +++   N   +SN+ M++      KF+WWY
Sbjct: 56  WYDVGRNYDMESNMDMYKDKNVVQKFLWWY 85



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 517 FAGQHNTGMHFLH 555
           +AG+H   M FLH
Sbjct: 22  YAGRHTADMDFLH 34


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 157 SNESIVRYITSFYWFI*RYNSMETNLAVRIIYNNQERNIFSMCIPPNKFY 306
           SN++I       Y +  +YN    N   ++ Y N   NI  + +P   +Y
Sbjct: 86  SNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYY 135


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 545 IFFIGKYVNGYMLIYSM 595
           ++F+ +YVNG  L+Y +
Sbjct: 60  LYFVMEYVNGGDLMYQI 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,870
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)