Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_G19
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.070
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   1.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 0.070
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 345 YIDTCFSVFLDSNFCCVYIFTATKRSSGYVLY 440
           Y   C  V+   NF C+ +    KR  GY L+
Sbjct: 218 YTADCTQVYSTGNFTCLEVVFVLKRRLGYYLF 249


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 214 VEDPNHYCIGQMNRNISNHEEALIPVAVVCFEK 312
           +ED  H+C       ++N E AL+   V+  E+
Sbjct: 456 IEDLLHFCRQMYAMKVNNAEYALLTAIVIFSER 488


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 61  CCPNGQIIKPRGYCDAQHRVNITCANGRMLLEDIILTGDKVSTRDSP 201
           C PN  +I P  +CD    +++ CA+ R+    + +    V    SP
Sbjct: 49  CGPN--VINPF-FCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSP 92


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 55  RQCCPNGQIIKPRGYCDAQHRVNITCANG 141
           R C  +  + K  G+C++Q + ++    G
Sbjct: 58  RTCSGDISVTKCEGFCNSQVQPSVASTTG 86


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 195 ISCGDFVTCKNNIFKQHSSICTGYVNS 115
           ++ G +    NN++K    +CT  VNS
Sbjct: 299 VALGSYNKFNNNVYKDALIVCT--VNS 323


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 195 ISCGDFVTCKNNIFKQHSSICTGYVNS 115
           ++ G +    NN++K    +CT  VNS
Sbjct: 352 VALGSYNKFNNNVYKDALIVCT--VNS 376


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +1

Query: 55  RQCCPNGQIIKPRGYCDAQHRVNITCANG 141
           R C  +  + K  G+C++Q + ++    G
Sbjct: 58  RTCSGDISVTKCEGFCNSQVQPSVASTTG 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,213
Number of Sequences: 438
Number of extensions: 2739
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)