Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_C04
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    28   0.66 
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   3.5  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   3.5  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   4.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   6.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.1  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -3

Query: 167 RNSEIITFPVVHCTTHDLERPLRHPSIVKKIFFFHIKYGSFLQKKKKKTGIKM 9
           R+ ++ T P+     H L+    HP+IVK I FF      +L  + +K GI +
Sbjct: 547 RDKDLGTVPMEISILHFLKAH-SHPNIVKMITFFEDNENYYLLTEPQKPGIDL 598


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 417 YSIYFQTKRTFRXXXXXXXFALTRIISEAKNNVGNLRYHL*QLLSNNSKPLVIIINSPT- 241
           Y   +QTK   R       +A  R+I++AKN     +Y L    SN      I+ +    
Sbjct: 12  YFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNG 71

Query: 240 DYFKCTLTHLGSY*WPKYVI 181
           DY    L H  S   P+Y I
Sbjct: 72  DY---VLAHAHSSELPRYGI 88


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 417 YSIYFQTKRTFRXXXXXXXFALTRIISEAKNNVGNLRYHL*QLLSNNSKPLVIIINSPT- 241
           Y   +QTK   R       +A  R+I++AKN     +Y L    SN      I+ +    
Sbjct: 12  YFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNG 71

Query: 240 DYFKCTLTHLGSY*WPKYVI 181
           DY    L H  S   P+Y I
Sbjct: 72  DY---VLAHAHSSELPRYGI 88


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 110 RPLRHPSIVKKIFFFH 63
           R + HP+I+K I FFH
Sbjct: 71  RAISHPNIIKLIAFFH 86


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 226  HVDSF-RQLLVAQICNNYLIHEILK*SHFLWYIAQ 125
            H D + R+LL+  I + Y+ H+I K    LW + Q
Sbjct: 1191 HSDQYLRKLLLKLITDLYINHDITKECFLLWDMKQ 1225


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 7   CILIPVFFFFFCRNDP 54
           C+L+  F  FF RNDP
Sbjct: 135 CLLLLAFKLFFIRNDP 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,804
Number of Sequences: 5004
Number of extensions: 38989
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)