Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_C04
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428...    29   2.0  
05_05_0241 - 23551471-23551591,23551755-23551833,23553140-235533...    27   8.1  

>07_03_0752 -
           21241883-21242233,21242336-21242486,21242586-21242823,
           21242917-21243127,21243214-21243344,21245046-21245931,
           21246087-21246140,21246397-21246461,21246842-21246892,
           21246960-21247029,21247493-21247597
          Length = 770

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 67  KKKIFLTIDGCRRGRSRSCVVQCTTGNVIISEFRVSNNY 183
           K  I L + GC  G+S S ++ CT  +V++ + R+   Y
Sbjct: 12  KLLIILLLHGCMSGKSPSGILNCTHCSVLLHKSRLPCKY 50


>05_05_0241 -
           23551471-23551591,23551755-23551833,23553140-23553334,
           23553466-23553518,23553642-23553742,23553844-23553918,
           23554033-23554272,23554369-23554490,23554582-23554706,
           23554830-23554909,23555064-23555261
          Length = 462

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 267 LVIIINSPTDYFKCTLTHLG 208
           + +I+  P  YFK T+TH+G
Sbjct: 114 VALIVRPPYPYFKFTITHIG 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,734
Number of Sequences: 37544
Number of extensions: 196172
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)