Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_C03
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 32 0.054
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 1.2
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po... 26 3.5
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.7
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 25 6.2
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 6.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 6.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.2
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.054
Identities = 22/49 (44%), Positives = 27/49 (55%)
Frame = -2
Query: 427 TKLDLKEANDGIDPATYLPVAARPFALARLMSSCCPTGTLSSLPAQARS 281
TKL+ + N I P P AARP R MS+ CP SSL A+A+S
Sbjct: 111 TKLEQSKQNKRIVPLEREPRAARPPKRPRPMSNYCPK---SSLMARAKS 156
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 196 TEASSSDWPPERKVTPGTAAGTVLSK 119
T A+ S+ PP VTP TA + LS+
Sbjct: 342 TSANYSNTPPRNTVTPSTARSSTLSQ 367
>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 7 DHHVYLEGTLLKPNMVTAVSRARRLTL 87
+HHV+LEG L P++V +++ +TL
Sbjct: 17 EHHVHLEG-CLSPDLVFRLAKKNGITL 42
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 323 SNGNIILFAGPSTEHGSLESAAVAER 246
S + ++F GPS H SL+ +AE+
Sbjct: 382 SEASEVVFVGPSLAHLSLQCRGIAEK 407
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 4.7
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -2
Query: 334 SSCCPTGTLSS-LPAQARSTEAWRARP*LNVSTQGLFRSTELIAFRLTEASSSDWPPERK 158
+S TGT SS LP+ + S + P ST + T + T ++S+ PP
Sbjct: 320 ASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV---TPTVPPTSTSSTSTPPPPAST 376
Query: 157 VTPGTAAGTVLSKAVTVARAISI 89
+ GT++ +LS + + + SI
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSI 399
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 4.7
Identities = 20/96 (20%), Positives = 39/96 (40%)
Frame = -2
Query: 385 ATYLPVAARPFALARLMSSCCPTGTLSSLPAQARSTEAWRARP*LNVSTQGLFRSTELIA 206
+T +PV + + S+ T ++ + ++ +W A S+ + S
Sbjct: 892 STSIPVTSS--VAPAVTSTGSETSSVVGSGTDSATSSSWTAE----TSSSAITSSVAASV 945
Query: 205 FRLTEASSSDWPPERKVTPGTAAGTVLSKAVTVARA 98
+ +S+S W +V P TAA S ++A A
Sbjct: 946 TPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATA 981
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 6.2
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 66 SCKKTYTPMDIARATVTALLRTVPAAVPGVTFLSGGQSEEEASVNLN-AINSVDL 227
S T + I ++V+ L ++PA + VT EE+AS+N+N A++S+ L
Sbjct: 70 SSSNTARKIFICTSSVSNLASSIPALIKVVT----PTKEEDASLNINLAVSSLIL 120
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 331 NSSSVPRRTVSQPPANTSPDLS 396
N S P + QPP NT P +S
Sbjct: 106 NVPSTPSDSTQQPPTNTLPSVS 127
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.0 bits (52), Expect = 6.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 347 GTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQIDR-VDSIQVNGS 189
G+LDE L + I+F S + G + + +Q P + R VD++ N S
Sbjct: 55 GSLDERLFLTEDDIIFHDRSIQLGYFDPSLSERKQSPPGKSLHRFVDNLNPNSS 108
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 8.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 283 SVLGPAKRIMFPLDSRNSSSVPRRTVSQPP 372
S LG A + M P RN SSV T + PP
Sbjct: 65 STLGSANQPMAPPSLRNRSSVYLPTPAGPP 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,968
Number of Sequences: 5004
Number of extensions: 34462
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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