Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_C03
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 148 2e-36
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 148 2e-36
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 147 3e-36
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 147 3e-36
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 44 8e-05
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 31 0.60
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 30 1.0
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 30 1.0
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 1.4
AF025461-4|AAB70993.1| 270|Caenorhabditis elegans Hypothetical ... 28 3.2
AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily a... 27 7.4
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 27 7.4
U23511-2|AAC46792.1| 369|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 9.8
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 9.8
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 148 bits (358), Expect = 2e-36
Identities = 74/116 (63%), Positives = 90/116 (77%)
Frame = +3
Query: 96 IARATVTALLRTVPAAVPGVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQA 275
I ATVTAL R VPAAVPG+TFLSGGQSE +A+ NLNAINSV L +PW LTFSYGRALQA
Sbjct: 252 IGLATVTALRRGVPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQA 311
Query: 276 SVLRAWAGKEDNVPVGQQELIKRAKANGLAATGKYVAGSIPSLASFKSNFVKSHAY 443
SVL+AW GK++N+ Q+ L+ R+KANG A+ GKY AG + A+ +S FV H+Y
Sbjct: 312 SVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKY-AGEDAAGAAAESLFVAKHSY 366
Score = 43.6 bits (98), Expect = 8e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1 LSDHHVYLEGTLLKPNMVT 57
L+DHHVYLEGTLLKPNMVT
Sbjct: 220 LADHHVYLEGTLLKPNMVT 238
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 148 bits (358), Expect = 2e-36
Identities = 74/116 (63%), Positives = 90/116 (77%)
Frame = +3
Query: 96 IARATVTALLRTVPAAVPGVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQA 275
I ATVTAL R VPAAVPG+TFLSGGQSE +A+ NLNAINSV L +PW LTFSYGRALQA
Sbjct: 252 IGLATVTALRRGVPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQA 311
Query: 276 SVLRAWAGKEDNVPVGQQELIKRAKANGLAATGKYVAGSIPSLASFKSNFVKSHAY 443
SVL+AW GK++N+ Q+ L+ R+KANG A+ GKY AG + A+ +S FV H+Y
Sbjct: 312 SVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKY-AGEDAAGAAAESLFVAKHSY 366
Score = 43.6 bits (98), Expect = 8e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1 LSDHHVYLEGTLLKPNMVT 57
L+DHHVYLEGTLLKPNMVT
Sbjct: 220 LADHHVYLEGTLLKPNMVT 238
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 147 bits (357), Expect = 3e-36
Identities = 70/117 (59%), Positives = 87/117 (74%)
Frame = +3
Query: 93 DIARATVTALLRTVPAAVPGVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQ 272
DI ATVTAL R VP+AVPGV FLSGGQSEE+A++NLNAIN V K+PW LTFSYGRALQ
Sbjct: 249 DIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQ 308
Query: 273 ASVLRAWAGKEDNVPVGQQELIKRAKANGLAATGKYVAGSIPSLASFKSNFVKSHAY 443
AS L WAGK++N+ Q+ L+ RA+ N LA+ GKY + A+ +S FV +H+Y
Sbjct: 309 ASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKYTGDASADAAASQSLFVANHSY 365
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/20 (80%), Positives = 20/20 (100%)
Frame = +1
Query: 1 LSDHHVYLEGTLLKPNMVTA 60
L++HHV+LEGTLLKPNMVT+
Sbjct: 217 LNEHHVFLEGTLLKPNMVTS 236
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 147 bits (357), Expect = 3e-36
Identities = 70/117 (59%), Positives = 87/117 (74%)
Frame = +3
Query: 93 DIARATVTALLRTVPAAVPGVTFLSGGQSEEEASVNLNAINSVDLKRPWVLTFSYGRALQ 272
DI ATVTAL R VP+AVPGV FLSGGQSEE+A++NLNAIN V K+PW LTFSYGRALQ
Sbjct: 250 DIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQ 309
Query: 273 ASVLRAWAGKEDNVPVGQQELIKRAKANGLAATGKYVAGSIPSLASFKSNFVKSHAY 443
AS L WAGK++N+ Q+ L+ RA+ N LA+ GKY + A+ +S FV +H+Y
Sbjct: 310 ASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKYTGDASADAAASQSLFVANHSY 366
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/20 (80%), Positives = 20/20 (100%)
Frame = +1
Query: 1 LSDHHVYLEGTLLKPNMVTA 60
L++HHV+LEGTLLKPNMVT+
Sbjct: 218 LNEHHVFLEGTLLKPNMVTS 237
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 43.6 bits (98), Expect = 8e-05
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +1
Query: 1 LSDHHVYLEGTLLKPNMVT 57
L+DHHVYLEGTLLKPNMVT
Sbjct: 220 LADHHVYLEGTLLKPNMVT 238
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 365 CETVRLGTLDEFLLSNGNIILFAGPSTEHGSLESAAVAERQYPGSLQID--RVDSIQV-N 195
C G FL+ N IL GP H S+ S+ ++QYP +L + R S+Q+ N
Sbjct: 209 CAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFN 268
Query: 194 GSLLFRLAT 168
S F T
Sbjct: 269 ESRKFAYRT 277
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 311 IILFAGPSTEHGSLESAAVAERQYPGSLQIDRVDSIQVNGSL 186
++L +GP + E A A+R P QI RV+ I +NGS+
Sbjct: 94 LVLSSGPVRQEDHEEQIARAQRIQPVVDQIQRVEQIILNGSV 135
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 311 IILFAGPSTEHGSLESAAVAERQYPGSLQIDRVDSIQVNGSL 186
++L +GP + E A A+R P QI RV+ I +NGS+
Sbjct: 94 LVLSSGPVRQEDHEEQIARAQRIQPVVDQIQRVEQIILNGSV 135
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 1.4
Identities = 28/95 (29%), Positives = 46/95 (48%)
Frame = -2
Query: 388 PATYLPVAARPFALARLMSSCCPTGTLSSLPAQARSTEAWRARP*LNVSTQGLFRSTELI 209
P+TY+PV++ + L S TG+ +S P S+ + + P ST ++ +
Sbjct: 589 PSTYIPVSSASSIYSTLSGS---TGSTAS-PGTTESSGSSTSGP----STISGSSASTVT 640
Query: 208 AFRLTEASSSDWPPERKVTPGTAAGTVLSKAVTVA 104
+TEAS+ E PG+ TV S+A TV+
Sbjct: 641 GSTVTEASTISGSTESSTIPGSTESTV-SEASTVS 674
>AF025461-4|AAB70993.1| 270|Caenorhabditis elegans Hypothetical
protein M01D1.7 protein.
Length = 270
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 35 FSNLIWLPPSVVQEDLHSNGYRTRHCHRFTQDRTC 139
F +WL P V+ +L NG HC F R C
Sbjct: 51 FELSVWLHPYAVELELFKNGEGATHC-SFRDGRAC 84
>AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform b protein.
Length = 648
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -1
Query: 296 GPSTEHGSLESAAVAERQYPGSLQIDRVDSIQVNGSLLFRL-----ATREESD-SRDSGR 135
GP +H LE+ AVA+ + L+ + + +++ +++ + ATR ES S DSGR
Sbjct: 54 GPLYQHYMLEAVAVADDEVKIPLEEVKEEPVELPAAVVHEVVALKPATRRESSISSDSGR 113
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -1
Query: 296 GPSTEHGSLESAAVAERQYPGSLQIDRVDSIQVNGSLLFRL-----ATREESD-SRDSGR 135
GP +H LE+ AVA+ + L+ + + +++ +++ + ATR ES S DSGR
Sbjct: 542 GPLYQHYMLEAVAVADDEVKIPLEEVKEEPVELPAAVVHEVVALKPATRRESSISSDSGR 601
>U23511-2|AAC46792.1| 369|Caenorhabditis elegans Hypothetical
protein C32D5.4 protein.
Length = 369
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 291 WAGKEDNVPVGQQELIKRAKANGLAATGKYVA-GSIPSLASFKSNFV 428
W GKE NVP + L +R + A+T K V+ G + L NFV
Sbjct: 252 WLGKETNVPGPTELLRERNVSPNTASTIKNVSPGRMIDLPEGLKNFV 298
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 26.6 bits (56), Expect = 9.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 174 QSEEEASVNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGK-EDNVPVGQQELIKRAK 350
Q+ A VN + +D+ LQA + A AG DN + +L+ A
Sbjct: 59 QASTSAPVNQLLASGIDMSS----VIKNNAVLQALLASASAGGFGDNAGLTMSKLLTAAL 114
Query: 351 ANGLAATGKYVAGS 392
ANG A K AGS
Sbjct: 115 ANGSTAVAKRDAGS 128
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 26.6 bits (56), Expect = 9.8
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 174 QSEEEASVNLNAINSVDLKRPWVLTFSYGRALQASVLRAWAGK-EDNVPVGQQELIKRAK 350
Q+ A VN + +D+ LQA + A AG DN + +L+ A
Sbjct: 59 QASTSAPVNQLLASGIDMSS----VIKNNAVLQALLASASAGGFGDNAGLTMSKLLTAAL 114
Query: 351 ANGLAATGKYVAGS 392
ANG A K AGS
Sbjct: 115 ANGSTAVAKRDAGS 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,719
Number of Sequences: 27780
Number of extensions: 204036
Number of successful extensions: 620
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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