Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_C01
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)                 29   1.6  
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)                  29   1.6  
SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)                    29   1.6  
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   3.6  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)                    27   3.6  
SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_51815| Best HMM Match : RVT_1 (HMM E-Value=0.23)                    27   6.3  
SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)                      27   6.3  
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               27   6.3  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     27   6.3  
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 160  CTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRC 315
            C +    CPA      K  CP       ECC +VL+ I   R H   C   C
Sbjct: 1246 CLKDARGCPATCVEDCKPGCPP------ECCFAVLKPIQENREHSQSCPKIC 1291



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +1

Query: 160  CTEAETDCPAGTHI-TAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYK 336
            C+E    CP        K  CPS      ECC +VL  +   +SH   C   C E+    
Sbjct: 1304 CSEHSNACPQECSTDNCKPSCPS------ECCLTVLTPLKENKSHQEGCPAVCSESC--- 1354

Query: 337  NADDCNIK 360
               DC IK
Sbjct: 1355 -KPDCPIK 1361


>SB_162| Best HMM Match : Extensin_2 (HMM E-Value=0.79)
          Length = 820

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 256 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 125
           +D  L+P  VD +K++++ CE Q  SP       RR   + +R+
Sbjct: 688 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 731


>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
          Length = 959

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 256 NDNILRPYAVDLDKDLSQ*CEYQPDSPFQLRYTSRRTHYKVVRR 125
           +D  L+P  VD +K++++ CE Q  SP       RR   + +R+
Sbjct: 827 SDQALKPNNVDENKNITRDCELQMKSPSATSLEDRRQEEEELRQ 870


>SB_13995| Best HMM Match : ASC (HMM E-Value=0.0034)
          Length = 610

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 262 LRKINTCRSHGG-ECMDRCPENLTYKNA 342
           L ++N     GG +C+++CP+  TYK A
Sbjct: 104 LNRVNMMYQEGGLKCLEKCPQPCTYKFA 131


>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 241 VECCHSVLRKINTCRSHGGECMDRC-PENLTYKNADDC 351
           V C   V+R++ TC + G  C D   PE +      DC
Sbjct: 578 VTCGEGVVRRVVTCSAGGNRCQDDTKPEVVKLCELPDC 615


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +1

Query: 133  QPCNAFGGKCTEA--ETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECM 306
            Q C  + G   +A  + DCP     + +G C +   R  +C           +  G +C 
Sbjct: 1573 QKCECYPGWAGDACDKLDCPGSPPCSGQGECSNTNPRRCQCFP---------KWGGEKCE 1623

Query: 307  DRCPENLTYKNADDC 351
              C     Y NA DC
Sbjct: 1624 IPCLNGYNYGNASDC 1638


>SB_18957| Best HMM Match : zf-TAZ (HMM E-Value=3.7)
          Length = 117

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 76  INQSNGVIEPSKATLVYDEQPCNAFGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCH 255
           +N    +I  + + +V+D+Q     GG+C  A  D    +H    G C +  H G +C  
Sbjct: 11  VNGGQWLIAQAASVIVHDDQCVIVHGGQCMIAHGDRCTVSH---SGRC-TVAHGG-QCV- 64

Query: 256 SVLRKINTCRSHGGEC 303
            ++       +HGG+C
Sbjct: 65  -IVHGSQCVIAHGGQC 79


>SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 80  LIRKTHRKHTKNGRRKH 30
           LIR THRKH KN +  H
Sbjct: 139 LIRSTHRKHCKNEKCTH 155


>SB_51815| Best HMM Match : RVT_1 (HMM E-Value=0.23)
          Length = 297

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 316 PENLTYKNADDCNIKNK 366
           PE L  +N DDC I NK
Sbjct: 254 PEKLNARNRDDCEIHNK 270


>SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)
          Length = 299

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 166 EAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYKNAD 345
           E E   P+ TH TA  +  ++ HRG    H VLR +N    +     D     ++   A 
Sbjct: 15  EDEASGPSDTH-TASPM-QTESHRGNGESHEVLRTLNDLNRNMASMADTLASFMSAHTAQ 72

Query: 346 DCNIKNK 366
             N   K
Sbjct: 73  GVNASRK 79


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 145 AFGGKCTEAETDCPAGTH 198
           +FG  C+E E DC  G H
Sbjct: 655 SFGAACSEVEIDCLTGDH 672


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
 Frame = +1

Query: 139 CNAFGGKCTEAETDCPAGTHITAKGL----CP---SQQHRGVECCHSVLRKINTCRSHGG 297
           CN+  G C+E ++  P      AK L    CP   SQ   G  CC     +   C     
Sbjct: 392 CNSSSGTCSEGDSVLPLFKKTPAKQLKNVVCPDETSQCPDGNTCCKLSSGQYGCCPLPNA 451

Query: 298 ECMDR----CPENLTYKNADD-CN 354
            C D     CP   T   +   CN
Sbjct: 452 VCCDDGVHCCPNGYTCDTSSGRCN 475


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 154 GKCTEAETDCPAGTHITAKG-LCPSQQHRG 240
           GKC   E  C  G  +  K   CPSQ HRG
Sbjct: 296 GKCPPCEQTC--GRTLNCKNHKCPSQCHRG 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,132
Number of Sequences: 59808
Number of extensions: 227409
Number of successful extensions: 591
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)