Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_B24
         (354 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    32   0.58 
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    29   4.1  
BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.       28   7.2  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    28   7.2  

>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
 Frame = +3

Query: 246 HSLTFLCIFS--CLYNHIF---CI---IYTYNS*FIFLYPY 344
           H+  ++C++   C+Y H++   CI   +YTY   +I +YPY
Sbjct: 2   HTYIYMCVYPYICIYMHVYPCICIYLHVYTYICMYIHIYPY 42


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 241 IIIH*LFYVFSHVYIITFFVSYIHIILDSYFYTLI 345
           I ++  FY+F+++Y+  F   YI + +  Y Y  I
Sbjct: 33  IYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYI 67


>BC016950-1|AAH16950.1|   75|Homo sapiens KLHL23 protein protein.
          Length = 75

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 255 TFLCIFSCLYNHIFCIIYTYNS*FIFLY 338
           T +CI  C+Y ++   IYTY   ++++Y
Sbjct: 41  TCVCIHICVYIYMCVYIYTYIRIYVYIY 68



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 262 YVFSHVYIITFFVSYIHIILDSYFYTLI 345
           YV++H+Y+     SYI   +  Y YT +
Sbjct: 4   YVYTHIYVFICMRSYIRAYVYIYVYTYV 31


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 247 IH*LFYVFSHVYIITFFVSYIHIILDSYFYT 339
           I+   YV++H YI T+   Y+ I   +Y +T
Sbjct: 13  IYTCIYVYTHTYIYTYTCMYVCIYSHTYIHT 43


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,102,142
Number of Sequences: 237096
Number of extensions: 922772
Number of successful extensions: 6141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6119
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)