Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B23
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 28 0.30
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 1.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 2.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 2.8
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 24 4.8
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 6.4
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 24 6.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 24 6.4
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 24 6.4
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 23 8.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 8.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 23 8.5
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 28.3 bits (60), Expect = 0.30
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 197 SRNTAWSWFSFLTINDCCRFTFITFV-AWFXXXXXXXXXXSIAFF 66
S N W W SF+T C + FI V WF ++ +F
Sbjct: 549 SENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYF 593
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 1.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 76 SPFSPLIPIAPCPPGLPSKPRSP 8
+P P P+AP P +PS P+ P
Sbjct: 601 APSVPQPPVAPVAPEVPSVPQRP 623
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 64 PLIPIAPCPPGLPSKPRSPLS 2
P P+AP P +PS P+ P++
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVA 595
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 2.1
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 152 RLWSKRRT--RTTRCSWNRWSSRVRWCPWCSRI 244
++W R + + T+ + N V WCPW S +
Sbjct: 329 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 361
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -1
Query: 189 HRVVLVLLFDHKRLLQVHLYHLCSLVHQLN 100
H V+ +L ++ L++V + +C+L++QLN
Sbjct: 1013 HPVMRMLSCNNASLIRVSMDTVCALIYQLN 1042
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 4.8
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -1
Query: 285 QGTLGLLSFLGHHSILEHQGHHLTLED----HLFQEHRVVLVLLFDHKRLLQVHL 133
+ L LLS++ H + HH ++ H+ + R +L L D K + V +
Sbjct: 318 EALLSLLSYINTHQRQSERSHHFSILSLILFHIIIDDRSLLYRLTDKKFKISVRV 372
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 186 RVVLVLLFDHKRLLQVHLYHL 124
R++LVLL D L H Y L
Sbjct: 1816 RIILVLLHDFPGFLATHCYQL 1836
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 23.8 bits (49), Expect = 6.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 242 SWSTRGTI*PWKTIYSRNTAWS 177
SWS G + W + S+ T WS
Sbjct: 107 SWSPSGELLLWSSFDSKITVWS 128
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 23.8 bits (49), Expect = 6.4
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +2
Query: 230 WCSRIEWCPRND 265
WC+ +++CPR D
Sbjct: 533 WCAVMDFCPRGD 544
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 23.8 bits (49), Expect = 6.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 150 VVYGQKGEPGPRGVPGIDGLPG 215
+ YGQKG V G+ G PG
Sbjct: 104 ITYGQKGTGKTYSVVGLRGQPG 125
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 23.4 bits (48), Expect = 8.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 203 WSSRVRWCPWCSR 241
W SR R+CP C +
Sbjct: 175 WISRYRFCPGCGK 187
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.4 bits (48), Expect = 8.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +2
Query: 230 WCSRIEWCPRNDRRPRV 280
W ++ WCP N R V
Sbjct: 305 WYTKSSWCPSNSNRVAV 321
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 23.4 bits (48), Expect = 8.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 142 LQQSFMVKKENQDHAVFLE 198
L Q + +++ N DH VF+E
Sbjct: 386 LTQDYNLRQSNYDHIVFIE 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,107
Number of Sequences: 5004
Number of extensions: 22124
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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