Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B22
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 29 1.8
Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical p... 28 3.1
DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like... 28 3.1
AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein. 28 3.1
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 27 5.5
U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 7.2
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 27 9.5
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 27 9.5
U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide tr... 27 9.5
U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1 dual-specif... 27 9.5
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 27 9.5
U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1 dual-specif... 27 9.5
AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like phos... 27 9.5
AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical ... 27 9.5
AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity ... 27 9.5
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 63 QVSMPPSYKERYPEYY-KFSKQARHPRDVTWDK 158
+V +PP+ ER +Y KFS RHP W K
Sbjct: 4 EVEVPPTTYERLQQYKEKFSDALRHPDSPDWYK 36
>Z81564-6|CAB04572.1| 678|Caenorhabditis elegans Hypothetical
protein K05C4.6 protein.
Length = 678
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 299 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 165
T+N VC + A+V I +LP V TE ++ L CT S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408
>Z81097-10|CAB03169.1| 492|Caenorhabditis elegans Hypothetical
protein K07A1.8 protein.
Length = 492
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 348 KNANAALDISKQIGGRPNLSASGAGVW 428
++ N +DI+ +IGG+ + A G G+W
Sbjct: 83 ESENFQVDIALKIGGQGRVGADGLGIW 109
>DQ384615-1|ABD34785.1| 492|Caenorhabditis elegans ERGIC-53-like
protein protein.
Length = 492
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 348 KNANAALDISKQIGGRPNLSASGAGVW 428
++ N +DI+ +IGG+ + A G G+W
Sbjct: 83 ESENFQVDIALKIGGQGRVGADGLGIW 109
>AF016853-1|AAB94552.1| 678|Caenorhabditis elegans HMP-2 protein.
Length = 678
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 299 TQNPGAVCLPFQLTAIV--IEKLPRVSSFTE*SIVILSECTEYFSVA 165
T+N VC + A+V I +LP V TE ++ L CT S+A
Sbjct: 362 TRNKQTVCSHGGIDALVTAIRRLPEVEEVTEPALCALRHCTARHSLA 408
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -3
Query: 301 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 161
G L PY C N+ +C P + P CP T P P+
Sbjct: 364 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 411
>U58757-8|AAC47918.3| 506|Caenorhabditis elegans Hypothetical
protein C01B10.6a protein.
Length = 506
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Frame = -3
Query: 301 GPKTLVPYA-CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPM 161
G L PY C N+ +C P + P CP T P P+
Sbjct: 367 GQNALSPYGVCYKNICSDQCFSCACSPGAKSPPDQSCPKPSPTDPTPV 414
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -3
Query: 331 LPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPALP---NNPSSFCPSVPNTFPLP 164
LPP + P P A P N PR++L ++ P P +PS S P T +P
Sbjct: 1278 LPPANTIMPPPPPYNQASAVPLNPPRTALPPLQLPPLQPLQSESPSWASMSAPPTALIP 1336
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein
M02E1.1a protein.
Length = 1077
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 229 YPALPNNPSSFCPSVPNTFPL 167
+P+ NNP CPS+ +FP+
Sbjct: 1042 FPSFSNNPMPACPSMIPSFPV 1062
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 354 ANAALDISKQIGGRPNLSASGAGVWNFDKNTRLSAGGS 467
A+ LD++ +G P+L ASG +FDK R G S
Sbjct: 418 ASKVLDVATNMGASPSLFASG----HFDKKLRFYDGRS 451
>U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide
transporter protein 2 protein.
Length = 835
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 178 YSVHSDKMTMDYSVKLDTRGSFSMTIAVSWKGKHTAPGFW 297
Y+ H+D + ++ GS S AV++K K PG+W
Sbjct: 596 YNSHTDDRDQNATIT----GSLSSQPAVTYKQKSVKPGYW 631
>U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform c
protein.
Length = 439
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 274 CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPN 179
CP +P+S+ NC V+P ++ SS PS P+
Sbjct: 188 CPPKVPKSASSNC-VFPGSTHDESS--PSSPS 216
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 274 CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPN 179
CP +P+S+ NC V+P ++ SS PS P+
Sbjct: 292 CPPKVPKSASSNC-VFPGSTHDESS--PSSPS 320
>U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform a
protein.
Length = 657
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 274 CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPN 179
CP +P+S+ NC V+P ++ SS PS P+
Sbjct: 343 CPPKVPKSASSNC-VFPGSTHDESS--PSSPS 371
>AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like
phosphatase 1 protein.
Length = 657
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 274 CPSNLPRSSLKNCRVYPALPNNPSSFCPSVPN 179
CP +P+S+ NC V+P ++ SS PS P+
Sbjct: 343 CPPKVPKSASSNC-VFPGSTHDESS--PSSPS 371
>AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical
protein W02F12.3 protein.
Length = 388
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -3
Query: 385 ICLLISRAAFAFLLDQSNLPPKFEVSPAGPKTLVPYA---CPSNLPRSSLKNCRVYPALP 215
IC L + + +N+P V+P +T P A P P SS++ P LP
Sbjct: 99 ICPLCGSNRVSNTEENTNVPVTGNVTPRDVQTDQPVADLQSPPLSPSSSVEQSGSLPPLP 158
Query: 214 NNPSS 200
+P+S
Sbjct: 159 ESPAS 163
>AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity
peptide transporter protein.
Length = 796
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 178 YSVHSDKMTMDYSVKLDTRGSFSMTIAVSWKGKHTAPGFW 297
Y+ H+D + ++ GS S AV++K K PG+W
Sbjct: 557 YNSHTDDRDQNATIT----GSLSSQPAVTYKQKSVKPGYW 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,425
Number of Sequences: 27780
Number of extensions: 297390
Number of successful extensions: 916
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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