Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_B20
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 28 1.0
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 27 2.3
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 27 3.1
11_01_0395 + 2999855-2999920,3000605-3002191 26 4.1
07_01_0121 - 924306-925838 26 4.1
06_01_0880 - 6752159-6752437,6752547-6752762 26 4.1
08_01_0524 - 4560471-4560572,4560864-4560971,4561413-4561556,456... 26 5.4
06_03_0354 - 19818925-19819032,19819194-19819330,19819577-19819637 26 5.4
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 26 5.4
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 25 7.1
07_01_0784 + 6083477-6083653,6086052-6086238,6086672-6086844,608... 25 7.1
07_01_0624 + 4651995-4654715 25 7.1
10_07_0029 + 12031711-12032464,12044289-12044386 25 9.4
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 25 9.4
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 168 EYEIKGVTKDNSGYKGEPVPQYVSKDMM 251
E+ KG+TK + +G+P PQ+ S+D M
Sbjct: 16 EFMQKGITKLKNILEGKPEPQFSSEDYM 43
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 180 KGVTKDNSGYKGEPVPQYVSKDMM 251
KG+TK + +G+P PQ+ S+D M
Sbjct: 20 KGITKLKNILEGKPEPQFSSEDYM 43
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 108 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 221
+Y++ K VDEE+ +V+ + VTK Y+G+P
Sbjct: 34 VYQFNIAPKKIGVDEEIFVVDLKKGEVTK--GPYEGKP 69
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 167 YQNYLFVDRCVLGGAYVFINVTDVFFSDDC-EVEVSIRP 54
Y YLF+D+C+ G V D D + VSI P
Sbjct: 227 YSTYLFMDKCMFGRRVEKEKVIDFLLCSDLPDTYVSILP 265
>07_01_0121 - 924306-925838
Length = 510
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -2
Query: 242 LAYVLRDRLTFVPRVVFCHSLDLILYQNYLFVDRCVLGGAYVFINVTDVFFSDD 81
L L D FV + FC L Y +L +D+C+ G ++ + +D
Sbjct: 132 LQVTLEDMREFVIFLNFCPRLCRQPYSMHLLIDKCLFGRQMEMEHIMNFLLKED 185
>06_01_0880 - 6752159-6752437,6752547-6752762
Length = 164
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 150 EEVVLVEYEIKGVTKDNSGYKGEPVPQY 233
E V L+ + + G+T +SG EP P Y
Sbjct: 131 EPVKLLVHRLTGLTTGSSGLTAEPEPSY 158
>08_01_0524 -
4560471-4560572,4560864-4560971,4561413-4561556,
4561655-4561747,4561906-4561968,4562086-4562133,
4562677-4562835,4563251-4563589
Length = 351
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +3
Query: 60 DGNLYFTIVTKEDVSDIYKYV--CTAK--NAAVDEEVVLVE-YEIKGVTKDNSGYKGEPV 224
DG F +V K DV IYK + C A+ N+ D V + + Y ++ T++ +G
Sbjct: 83 DGGEPFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYLAARGLRN 142
Query: 225 PQY 233
P Y
Sbjct: 143 PLY 145
>06_03_0354 - 19818925-19819032,19819194-19819330,19819577-19819637
Length = 101
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 114 KYVCTAKNAAVDEEVVLVEYEIKGVT 191
++ C K D E+VLV+++I GVT
Sbjct: 34 RWCCMLKIGNQDGELVLVQFDIGGVT 59
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 212 FVPRVVFCHSLDLILYQNYL--FVDRC 138
F P+ +FC ++DL L N + F+ RC
Sbjct: 341 FSPQFLFCANMDLCLQSNKIESFIRRC 367
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 36 DRRITAGPDGNLYFTIVTKED 98
D +TAGPDGN+ ++ K+D
Sbjct: 363 DLLMTAGPDGNVQSELLFKKD 383
>07_01_0784 +
6083477-6083653,6086052-6086238,6086672-6086844,
6087520-6087678,6088677-6088817,6088880-6088941,
6089120-6089255,6091142-6091236,6091333-6091448,
6091538-6091667,6091757-6091811,6091889-6091930,
6092534-6092656
Length = 531
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 81 IVTKEDVSDIYKYVCTAKNAAVDEE 155
+++ D SD+ +Y T AA+D E
Sbjct: 319 VLSYSDASDVLRYAFTMTEAAIDHE 343
>07_01_0624 + 4651995-4654715
Length = 906
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 12 PNAD-VTDFDRRITAGPDGNL 71
PN+D VTD RR++ DGNL
Sbjct: 530 PNSDGVTDGSRRVSLQKDGNL 550
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 102 SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 227
SD++K A N +V ++ EI + KDN+ KG P P
Sbjct: 142 SDLHK-ATKALNDGKLMRIVALKDEIARLKKDNAQLKGLPAP 182
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 15 NADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYV 122
N DV D ++ IT+GP +YFT + DI K++
Sbjct: 582 NTDVDDKNKSITSGPRSLTLGVYFTGLVGYPSDDINKFL 620
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,195
Number of Sequences: 37544
Number of extensions: 107597
Number of successful extensions: 277
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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